Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2293
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    29   4.2  
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540...    29   4.2  
09_04_0047 - 14139706-14140140,14140234-14140636,14141028-141412...    29   5.5  
05_04_0300 - 19969066-19969535,19971216-19972686                       28   7.3  

>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 145 VGLRVNFSSFAVKRSPI*PLKFIQFVWISVVKMTMAVFSEVEVKRNDDI 291
           V L VNFSS     +   PL  +Q +W++++  T+   +      NDD+
Sbjct: 826 VALLVNFSSACFTGNA--PLTAVQLLWVNMIMDTLGALALATEPPNDDL 872


>03_02_0069 +
           5401789-5401965,5403514-5403568,5403674-5405649,
           5405710-5405868,5406081-5406252,5406617-5406915,
           5407147-5407392
          Length = 1027

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 145 VGLRVNFSSFAVKRSPI*PLKFIQFVWISVVKMTMAVFSEVEVKRNDDI 291
           V L VNFSS  +  S   PL  +Q +W++++  T+   +      ND++
Sbjct: 834 VALIVNFSSACLTGSA--PLTAVQLLWVNMIMDTLGALALATEPPNDEL 880


>09_04_0047 -
           14139706-14140140,14140234-14140636,14141028-14141272,
           14141341-14141576,14141651-14141939
          Length = 535

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 703 TIPL*PPGALL*RISFRDVPILVLNLPNVFKTFLP 599
           T+ L PP  LL R++F D+ +  L LP     ++P
Sbjct: 399 TLRLYPPATLLPRMAFEDIQLGGLRLPRGLSVWIP 433


>05_04_0300 - 19969066-19969535,19971216-19972686
          Length = 646

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 562 INWQNVNTSRNVPAHTRAFHVSSVNRQ 482
           +N  +VN +  +PAH+ A+H    NR+
Sbjct: 524 VNSSSVNATEKIPAHSAAYHGKLKNRR 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,410,864
Number of Sequences: 37544
Number of extensions: 374969
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)