Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2293
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    31   0.70 
Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical pr...    25   7.0  
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 42  LSFIF*ITIFFNCHLSFQTL-SVFDLASKEQATPKGRVARKFFF-ICSQTIANMTLEIYP 215
           L FIF  TIFF  H SF    S   LA  E+     ++ RK+F  +C Q I  + +  +P
Sbjct: 206 LIFIFSQTIFFILHSSFYLCKSTTSLAVSERTK---KLKRKYFLSVCIQVIIPIVIMAFP 262

Query: 216 V 218
           V
Sbjct: 263 V 263


>Z69884-4|CAA93751.2|  913|Caenorhabditis elegans Hypothetical
           protein F31F6.5 protein.
          Length = 913

 Score = 24.6 bits (51), Expect(2) = 7.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +1

Query: 439 VRVF---FYKSYLIIVFFACLHLRHERHGCEPGHSATY*HFAS*FFVAIE 579
           VR+F    +  YL I  + C + R    G  PG+  T  H+ + +F  I+
Sbjct: 546 VRIFSGLIFVVYLAIAMYGCYNFRE---GLNPGNLVTNDHYIAKYFSDIK 592



 Score = 21.8 bits (44), Expect(2) = 7.0
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 625 EDSKPKLGRHGTISFIIKH 681
           E+++  LGR GT+ F++++
Sbjct: 628 ENTQYTLGREGTVFFLLEY 646


>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
            ZK287.4 protein.
          Length = 1208

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -2

Query: 731  LGRGLVFWYYHSPVTTRC--FIMKDIVP*RPNF-GFESSKCF*DIFTVILVDLNSMATKN 561
            +G  L+  +Y  P T  C  F  K     + NF  F+S         V       M+   
Sbjct: 777  VGNVLLRRWYFDPATRLCQPFYYKGFKGNQNNFQSFDSCSRACGATNVCSGGSPQMSVHT 836

Query: 560  *LAKCQYVAECPGSHPCL 507
             L  C + ++CP SH C+
Sbjct: 837  HLLSCNFESDCPYSHDCI 854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,577,255
Number of Sequences: 27780
Number of extensions: 364706
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)