Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2290
         (676 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    31   0.99 
Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    27   9.2  

>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
           family protein 16 protein.
          Length = 881

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = -3

Query: 437 SQQIKCCFPFMINQNHNTFLFLETVTLMTI 348
           S  + C FP M N ++  ++F++T+ L+T+
Sbjct: 718 SSTVLCIFPLMFNTSYMVWVFVKTILLVTV 747


>Z81584-9|CAB04680.2|  334|Caenorhabditis elegans Hypothetical
           protein T04C12.2a protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 207 LNIIIFYISFVYLIKSKVLKFNNQTDGVQNNEHR*SK 97
           + ++I +IS +++  S V  F N++  +QNN+ R +K
Sbjct: 111 VQVLIGFISALFMAISLVALFENRSSAIQNNKFRITK 147


>Z81584-2|CAE53738.1|  298|Caenorhabditis elegans Hypothetical
           protein T04C12.2b protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 207 LNIIIFYISFVYLIKSKVLKFNNQTDGVQNNEHR*SK 97
           + ++I +IS +++  S V  F N++  +QNN+ R +K
Sbjct: 75  VQVLIGFISALFMAISLVALFENRSSAIQNNKFRITK 111


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +1

Query: 304 NTKCCHFIIFQ*LMFIVMRVTVSKNKKVLWFW 399
           NTK    II+  ++F+++ + +  N  ++WF+
Sbjct: 265 NTKSTKIIIYTAIIFLIVELPLGINLAIIWFF 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,858
Number of Sequences: 27780
Number of extensions: 297021
Number of successful extensions: 552
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)