Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2290
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              24   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   4.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.7  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   6.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   6.1  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 428 FVEINLYFTYTISAPYFKLKNHLRSSVPNIETSM*KPSLTTKY 556
           FV   + FT T+SA ++ +      +VP + T + + SL   Y
Sbjct: 103 FVNDTVSFTTTVSARFWLMDCRNIGAVPKMATELYEESLFVPY 145


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 221 IVTRYVCNRNKSYVMAVFEISAATT*GV 304
           ++  Y C  N +Y M V+E S +   G+
Sbjct: 227 VLKMYACCPNDTYPMIVYEFSISRHYGI 254


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 CIRNQCCHYLRRNTKCCHF 324
           C +NQ C  LR N   C +
Sbjct: 55  CTKNQQCSILRINRNRCQY 73


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 CIRNQCCHYLRRNTKCCHF 324
           C +NQ C  LR N   C +
Sbjct: 104 CTKNQQCSILRINRNRCQY 122


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 592 VTPYKLE*ILTSQQK*ARLKIDK 660
           +T Y +   L SQQK ++LKI K
Sbjct: 73  ITRYIIRMFLISQQKTSKLKIYK 95


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 592 VTPYKLE*ILTSQQK*ARLKIDK 660
           +T Y +   L SQQK ++LKI K
Sbjct: 56  ITRYIIRMFLISQQKTSKLKIYK 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,631
Number of Sequences: 438
Number of extensions: 4256
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)