Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2289
(729 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 28 1.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.6
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 3.6
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 4.8
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 26 4.8
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 26 4.8
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 26 6.3
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar... 26 6.3
SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.4
SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.4
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 8.4
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +3
Query: 144 SQTPTAVIWRRSNTHGW-KTTNLAEERIKLSL 236
S P++++ R S+TH W K TN + E + L L
Sbjct: 619 SSLPSSLLNRGSSTHSWEKLTNASTEEVMLPL 650
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 700 NSQSTWTPSKNFPHLQKFLNRLYKNVS 620
NS S W+ + +F + FL L KNV+
Sbjct: 277 NSSSFWSAADSFKEVSSFLKNLLKNVT 303
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 729 RRVSPFAARKIPNRRGHHQKISHTC 655
R +SP A ++ N R HH K+S C
Sbjct: 675 RLLSPEAEKEDENHRVHHVKVSEDC 699
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 450 AHGSWMATLKSSRPLHDRCRASKL 379
A +W L SRPL DR A+KL
Sbjct: 306 AIANWTMPLAHSRPLQDRFNAAKL 329
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 3/22 (13%)
Frame = -3
Query: 649 FLNRLYKNVSFFNV---VHEIE 593
FL+++Y+NVS FNV +H+IE
Sbjct: 37 FLSKIYENVSNFNVPRKLHDIE 58
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 628 NVSFFNVVHEIERVRQS 578
N +F N VHE+ER+R+S
Sbjct: 561 NRNFANYVHEVERLRES 577
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +1
Query: 346 WNKRRPQNNTRKF*SSATIVQGTRRFQSCHPRSVGRRTKTPKGRVRLERTVQRQFWTIDG 525
W++ +PQ R+ S+TI ++S +KT G + LE +Q
Sbjct: 10 WSQYKPQETQRRLSRSSTITPSVSEYRSGF-------SKTAFGNIELEEIPDKQ------ 56
Query: 526 GEISKPTS--KNSSFNRRLD 579
G I++ TS +++S+ + LD
Sbjct: 57 GNITRATSNLESNSYPKALD 76
>SPAPB1A10.07c |||sphingolipid biosynthesis
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Frame = -2
Query: 323 NHTTSAINLARELCLRESCARTHPTRQ-----STQRQFYPLFCQVCCFPAMCIRAAPDD 162
N + INL LC+ SC HPT Q S Q + C C + PD+
Sbjct: 232 NQAINTINLL--LCIAVSCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDE 288
>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 99
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = -1
Query: 486 QADTPFWGFCTAAHGSWMATLKSSR-PLHDRCRASKL 379
+A W C AA+G WM R L+ R SKL
Sbjct: 49 EAGFAVWSRCEAANGEWMEADNEDRCRLYQIYRESKL 85
>SPBC776.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 253
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 435 STIRGPPYKNPKRACPLGTNRTKAI 509
+TIR PPYK K +C N +
Sbjct: 127 NTIRSPPYKVKKESCHTEINNVSNV 151
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = -1
Query: 498 YGSFQADTPFWGFCTAAHGSWMATLKSSRPLHDRC 394
+GS+ T W HG + TL + P+ + C
Sbjct: 75 HGSYLVGTNLWIIMDYCHGGSVRTLMEAGPISEPC 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,376
Number of Sequences: 5004
Number of extensions: 76257
Number of successful extensions: 260
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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