Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2289
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673...    34   0.13 
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364...    34   0.13 
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209...    34   0.13 
01_01_1051 + 8290395-8290760,8291611-8291820,8292874-8292978,829...    29   2.9  
11_06_0145 - 20615044-20617167,20617444-20618076                       29   3.8  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    28   6.6  
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    28   8.7  

>11_06_0684 -
           26264540-26264661,26264926-26264989,26267168-26267371,
           26268322-26268456,26269174-26269492,26269581-26269631,
           26269721-26269864,26270080-26270160,26270252-26270302,
           26270392-26270535,26270750-26270833,26270912-26271055,
           26271147-26271196
          Length = 530

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 623 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 468
           F+++ R   +  GP   SL  K+  +D+  L  PP+ + N +C  + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351


>11_06_0460 +
           23836034-23836083,23836175-23836318,23836397-23836480,
           23836695-23836838,23836928-23836978,23837070-23837150,
           23837366-23837509,23837599-23837649,23837738-23838056,
           23839994-23840062,23840378-23840698,23841218-23841583,
           23842241-23842304,23842569-23842690
          Length = 669

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 623 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 468
           F+++ R   +  GP   SL  K+  +D+  L  PP+ + N +C  + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351


>11_06_0275 -
           21818071-21818192,21818457-21818520,21820699-21820902,
           21821852-21821986,21822704-21823022,21823111-21823161,
           21823251-21823394,21823610-21823690,21823782-21823832,
           21823922-21824065,21824280-21824363,21824442-21824585,
           21824677-21824726
          Length = 530

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 623 FFFQRRA*NR-TGPTESSLLLKEEFLDVGLLISPPSIVQNCLCTVRSKRTRPF 468
           F+++ R   +  GP   SL  K+  +D+  L  PP+ + N +C  + KR+R +
Sbjct: 299 FWYEERTRGKGKGPPSFSLCCKQGKVDLPTLKKPPTYLSNLMCKEKGKRSRNY 351


>01_01_1051 +
           8290395-8290760,8291611-8291820,8292874-8292978,
           8293040-8293048,8294426-8294539,8294632-8294796
          Length = 322

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -2

Query: 725 GLAPLPPGKFPIDVDTIKKFPTLAKIP*PT 636
           G  P P G F    D+I K P +AK+P PT
Sbjct: 267 GQVPGPQGSFVFVKDSIYKKPDIAKLPFPT 296


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = -3

Query: 220 LSSARFVVFQPCVFERRQMTAVGVCDFDQHGIAYGTAVLIAKFDTHV 80
           L    F++   CV++R  +  VG+   D  G  Y   V+     +HV
Sbjct: 238 LKERNFLLLLDCVWQRLDLEEVGIPSLDLVGSCYNRRVVFTACSSHV 284


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 203 KPGRREDKIVAAYFVEWGVYGRSFPVDKVPLPNLSHLLYGFIPICGGDGINDA 361
           +PG RE  +   +     V  RS P+DK  L      ++  +    GDG NDA
Sbjct: 665 RPGVRE-AVATCHAAGINVMARSLPLDKHTLVTNLRGMFNEVVAVTGDGTNDA 716


>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -3

Query: 502 FVRFVPSGHALLGFLYGGPRIVDGNFEIFASPARSLQSFKTSGYCFEGVVYSITTADG 329
           F   VP  H  +  +Y   R  +G+F   A+PA  L + K  GY  + V  +  +A+G
Sbjct: 391 FAEVVPPKHRTM--IYAFDRAFEGSFASLAAPAVGLVTEKIYGYDSKTVNLANGSAEG 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,887,681
Number of Sequences: 37544
Number of extensions: 532598
Number of successful extensions: 1591
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)