Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2289
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z70035-9|CAA93870.2|  450|Caenorhabditis elegans Hypothetical pr...    35   0.068
Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical p...    32   0.37 
Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical p...    32   0.37 
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    31   0.64 
Z70035-13|CAA93874.1|  432|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z47745-6|CAA87667.1|  432|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = +2

Query: 365 KTIPGSFEALQRSCRGREDFKVAIHDPWAAVQKPQKGVSAWNEPYKGNFGQLM-AAKLAN 541
           K I G F   + +   R+  ++  H  +         ++   E  +  F ++   A+ AN
Sbjct: 110 KRIVGYFAEFENTALTRKQLQMLTHIIYLFAIPKNGNMTFGGERSRRKFEEMKNEARKAN 169

Query: 542 PHLKILPSIGGWTLSDPFYFMHDVE-KRNVFVESVKEFLQVWEI 670
             LK++ SIGG + S  F  +   E  RNVFV S+  F+Q ++I
Sbjct: 170 STLKVMISIGGQSNSRSFSRLVSNETSRNVFVNSIVSFVQKYDI 213


>Z70035-9|CAA93870.2|  450|Caenorhabditis elegans Hypothetical
           protein R09D1.10 protein.
          Length = 450

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 527 AKLANPHLKILPSIGGWTLSDPFY-FMHDVEKRNVFVESVKEFLQVWEI 670
           A  A+P LK+L SIGG   SD F   +   +++ +F+ S+  FL+ ++I
Sbjct: 137 ANQASPKLKMLISIGGPANSDNFLPVISSPDRKKIFINSIVSFLKKYDI 185


>Z74031-12|CAE54902.1|  460|Caenorhabditis elegans Hypothetical
           protein F32D8.12b protein.
          Length = 460

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 321 VSYPSAVVME*TTPSKQYPEVLKLCNDRA 407
           ++ P AVV+E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>Z74031-11|CAD54138.1|  474|Caenorhabditis elegans Hypothetical
           protein F32D8.12a protein.
          Length = 474

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +3

Query: 321 VSYPSAVVME*TTPSKQYPEVLKLCNDRA 407
           ++ P AVV+E  T  +Q  E+LKLCNDRA
Sbjct: 48  IAPPPAVVLE-PTNVEQVSEILKLCNDRA 75


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 500 KGNFGQLMAAKLANPHLKILPSIGGWTLSDPFY--FMHDVEKRNVFVESVKEFLQVW 664
           +G + ++   K+ +  LK L S GGW+     +         R VF++S   F++ W
Sbjct: 113 EGMYRRVNKLKVTDTQLKTLLSFGGWSFGTALFQGMAASSASRKVFIDSAITFVRTW 169


>Z70035-13|CAA93874.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.11 protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 437 HDPWAAVQKPQKGVSAWNEPYKGN-FGQLM-AAKLANPHLKILPSIGGWTLSDPFYFMHD 610
           H  +A V     G   +N   + N F +L    +  N  +K++ SIGG   S  F  +  
Sbjct: 97  HTVFAFVYMTPDGTLLFNNQIEKNRFLKLKEVVRNGNSKIKLMFSIGGKDNSKYFSSVIP 156

Query: 611 VEKR-NVFVESVKEFLQVWEI 670
            E+R   F+ES+ EFL+ +++
Sbjct: 157 SEERIQTFIESILEFLEAYDL 177


>Z54342-3|CAA91154.1|  394|Caenorhabditis elegans Hypothetical
           protein C08H9.6 protein.
          Length = 394

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = +2

Query: 527 AKLANPHLKILPSIGGWTLSDPFYFMHDVEKRNVFVESVKEFL 655
           AK+ NP+LKI+  I G      F  + + EK+N F++S+  F+
Sbjct: 101 AKMDNPNLKIMVEING----KFFSVLAEDEKKNSFIKSISSFV 139


>Z47745-6|CAA87667.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.11 protein.
          Length = 432

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +2

Query: 437 HDPWAAVQKPQKGVSAWNEPYKGN-FGQLM-AAKLANPHLKILPSIGGWTLSDPFYFMHD 610
           H  +A V     G   +N   + N F +L    +  N  +K++ SIGG   S  F  +  
Sbjct: 97  HTVFAFVYMTPDGTLLFNNQIEKNRFLKLKEVVRNGNSKIKLMFSIGGKDNSKYFSSVIP 156

Query: 611 VEKR-NVFVESVKEFLQVWEI 670
            E+R   F+ES+ EFL+ +++
Sbjct: 157 SEERIQTFIESILEFLEAYDL 177


>Z93239-1|CAB07528.1|  512|Caenorhabditis elegans Hypothetical
           protein H03A11.1 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 542 PHLKILPSIGGWTLSDPFYFMHDVEK 619
           PH  I PS+G   LSDPF F+    K
Sbjct: 62  PHQPIPPSLGEKDLSDPFNFLFSSNK 87


>Z70035-1|CAA93861.1|  432|Caenorhabditis elegans Hypothetical
           protein R09D1.1 protein.
          Length = 432

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 548 LKILPSIGGWTLSDPF-YFMHDVEKRNVFVESVKEFLQVWEI 670
           LK++ SIGG  ++  F   + D +KR   +ES+  FL   +I
Sbjct: 136 LKVMISIGGMDINSDFSLVISDEKKRRSLIESIVSFLTEHQI 177


>U61950-3|AAC24288.1|  469|Caenorhabditis elegans Hypothetical
           protein C45E5.2 protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/46 (30%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +2

Query: 524 AAKLANPHLKILPSIGGW-TLSDPFYFMHDVEKRNVFVESVKEFLQ 658
           A K ++ ++K + SIG W +++     + +V+ R +F+ES+ +FL+
Sbjct: 67  AVKNSSSNVKSMISIGRWDSVTQLSSVLLNVKSRRMFIESIVDFLK 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,416
Number of Sequences: 27780
Number of extensions: 447010
Number of successful extensions: 1240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)