Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2284
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   8.9  
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch...    25   8.9  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +1

Query: 58  LISIKKT*NMTSSIRKHLKSPLERYFDKTMRHNNHLIVAAADNSSTPV 201
           LI+  K    + S   H K  LE YF     +NN +  AA     TP+
Sbjct: 374 LITKTKNPKWSKSHEYHFKD-LENYFKLPSEYNNGISFAAKGRRKTPL 420


>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 353 SAKSVT*PISPPGTSAR*VSRRMFSGGRDSNPVVNTFGKQLPLSS*VTLLPN 508
           + ++++ P + P  SAR  +       R S+PV N+ G   P+S   T  P+
Sbjct: 10  NVRNLSAPYNIPSQSARVAAGNAAINRRRSSPVENSPGNGFPVSEDATDYPS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,261
Number of Sequences: 5004
Number of extensions: 64281
Number of successful extensions: 142
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)