Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2282
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    27   2.1  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    26   3.7  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.0  

>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 208 TRRAHRDTKLTE*SCPLNRSLQYDRRNLASLNIAAGELSEPYR 336
           T  A+   K +E + P+N +L +   NL+  +  A  LSEP+R
Sbjct: 170 TLEAYVIAKASEKAFPINETLSH-LANLSKQDCVANSLSEPFR 211


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 324 RTVPRITEFIPCQEKGCPICVFD 392
           R  P+  E + C + GC ICV+D
Sbjct: 53  RVPPKPEEPLNCCQSGCAICVWD 75


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 351 IPCQEKGCPIC 383
           IPCQ + CP+C
Sbjct: 43  IPCQSRACPLC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,527
Number of Sequences: 5004
Number of extensions: 41149
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)