Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2281
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    30   0.21 
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ...    27   2.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   4.5  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    25   6.0  

>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 29.9 bits (64), Expect = 0.21
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 379 TIYWPAFYKRRDWENPGVTQLNCLAEHSPFPS 474
           T+     YK  DW + G+T   CL +  PFP+
Sbjct: 202 TLIHAVSYKESDWWSLGITFYECLFQVRPFPN 233


>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 192 YSYNGLPHPSNRNALLLHGRNWQGGGTYPCGLTRG 88
           Y YN     S R   ++  R+W G G   CG+  G
Sbjct: 172 YIYNHY-RDSTRQVTIVPNRHWGGNGAIGCGVGHG 205


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 447 AIKLGNARVFPVTTFVKRRPVNCNTTHYRANWVRAPPSSXXXXXFYGLDVWTSSQ 283
           A K G  RV P   +  + P+  NTT ++    +  PSS      Y LD  +S Q
Sbjct: 107 ARKSGAVRVIPPDNW--KCPLTINTTTFKFLTRKNNPSSMSLVSNYPLDAISSQQ 159


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 174 PHPSNRNALLLHGRNWQGGGTYP 106
           PHP N   ++L G N+Q     P
Sbjct: 97  PHPDNSKIVILMGSNFQNDANSP 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,055
Number of Sequences: 5004
Number of extensions: 44463
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)