Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2281
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0724 - 5415218-5415280,5415398-5415523,5415614-5415710,541...    30   1.1  
09_06_0345 + 22428356-22428547,22428920-22429363                       29   2.0  
11_06_0610 - 25449085-25453284                                         29   2.6  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    27   7.9  

>02_01_0724 -
           5415218-5415280,5415398-5415523,5415614-5415710,
           5415797-5415861,5415964-5416026,5416127-5416197,
           5416430-5416489,5416564-5416663,5416863-5416938,
           5417284-5417358,5417451-5417575,5417664-5417722,
           5418031-5418109,5418303-5418533
          Length = 429

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/44 (38%), Positives = 20/44 (45%)
 Frame = -2

Query: 135 RNWQGGGTYPCGLTRGPTTSTYVSIWIEQFHMKCPFPCIKPRAE 4
           R+ Q   T P G   G + ST VS WI       PF C  P+ E
Sbjct: 250 RDIQAWETIPLGPFLGKSFSTTVSPWIVTMDALKPFTCEAPKQE 293


>09_06_0345 + 22428356-22428547,22428920-22429363
          Length = 211

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 237 RKCATPLEI*VVRSQYSYNGLPHPSNRNALLLHGRNWQGGGTY 109
           R  A  LE  +   ++ + GLPHP  R+ LL+ GR   G G +
Sbjct: 112 RDIAIDLEGCINYVEFEFKGLPHP-QRDTLLMAGRPLNGVGCW 153


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/74 (31%), Positives = 32/74 (43%)
 Frame = -3

Query: 281  PPVVKWLMEPIDIYNVNAPPPLRYKL*GLSIVTTACPTLQTETHYCFTAEIGRAVVPTRA 102
            PP VK L  P+    V+ PPP +  L   +    A P  +++      AE      P   
Sbjct: 1322 PPAVKPLPPPVP--QVSLPPPKQESLPPPAKEAEAPPAKESKPPPAMEAE-----APPAF 1374

Query: 101  DSQEVLPPVRTFQY 60
            D+  +LPPV   QY
Sbjct: 1375 DTTVLLPPVMAHQY 1388


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 169 PFKPKRITASRQKLAGRWYLPVRTHKR 89
           P KP + T  R+KLAGR    +RT  R
Sbjct: 366 PNKPPKHTMPRKKLAGRQMPKIRTSSR 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,529
Number of Sequences: 37544
Number of extensions: 381420
Number of successful extensions: 719
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)