Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2280
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    29   0.95 
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   3.8  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    27   3.8  

>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 444 ETRLILNSTHCCFFFVIPHGY-VPPLHCSRASKLSQV 551
           E RL     HCC FF+ P G+ + P+  +   +L++V
Sbjct: 134 EKRLQDTRVHCCLFFIRPTGHSLRPIDIAVLKRLTEV 170


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -2

Query: 326 NYVNNSVTCNRSNYRKNRLRLTSASKYLRAHIHTHAKYVHTYERRAGLCIGRYF 165
           +Y+NN VT  R ++RKN   L  +   L+A + T  K +  +E   G  +G  F
Sbjct: 283 HYLNNGVTMFRFHWRKNEY-LIPSMMILKALLETSDKEI--FEGIVGKDLGNTF 333


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 302 MSLNYLRSFRFKYFTGCIFKKSGF 373
           M++N    +R  Y+ G IFKK GF
Sbjct: 126 MNINTNSVYRVAYYMGKIFKKQGF 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,455
Number of Sequences: 5004
Number of extensions: 64212
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)