Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2273
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0035 - 5872635-5873538,5873679-5873839,5873958-5874077,587...    28   7.1  

>05_02_0035 -
           5872635-5873538,5873679-5873839,5873958-5874077,
           5874202-5874330
          Length = 437

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 440 GYQRLCRKKSNKNIVSSICQTCADFQVDRGCLK 342
           G+ R  R ++  NIV   C + A FQV  G L+
Sbjct: 137 GFDRDLRWRTGVNIVPVSCDSAAGFQVTAGALR 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,443,007
Number of Sequences: 37544
Number of extensions: 258408
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)