Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2273
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical ...    27   8.5  
AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical...    27   8.5  

>Z81059-4|CAB02928.2|  228|Caenorhabditis elegans Hypothetical
           protein F11F1.6 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 440 GYQRLCRKKSNKNIVSSICQTCADFQVD 357
           GY+ +C ++   N+ ++ C T ADF  D
Sbjct: 73  GYEYMCAREVTDNLNTNTCPTFADFSDD 100


>AL117195-5|CAB55012.1|  732|Caenorhabditis elegans Hypothetical
           protein Y57A10A.7 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 520 RASVSKFSQVEPVRSPTRPRVA 455
           R S+SKFS +E  RSP R R++
Sbjct: 398 RKSISKFSGMEHSRSPKRARIS 419


>AF098996-6|AAC68709.1|  481|Caenorhabditis elegans Hypothetical
           protein T11F1.2 protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 76  P*CTFNFSQL*AVKIEAIRTNCPALC 153
           P CTFN+S++ +       T+C A+C
Sbjct: 68  PQCTFNYSEITSATSRFFPTSCDAVC 93


>AF098995-5|AAC67482.1|  477|Caenorhabditis elegans Hypothetical
           protein F58E1.4 protein.
          Length = 477

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 76  P*CTFNFSQL*AVKIEAIRTNCPALC 153
           P CTFN S++ +   +   TNC  +C
Sbjct: 33  PECTFNHSEITSATAQFFPTNCSEIC 58


>AF016684-16|AAB66213.1|  506|Caenorhabditis elegans Hypothetical
           protein F45C12.16 protein.
          Length = 506

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 76  P*CTFNFSQL*AVKIEAIRTNCPALC 153
           P CTFN S++ +   +   TNC  +C
Sbjct: 33  PECTFNHSEITSATAQFFPTNCSEIC 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,369,787
Number of Sequences: 27780
Number of extensions: 261081
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)