Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2272
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    28   1.4  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   4.2  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   5.6  
SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   7.4  
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   9.8  

>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 264 HSLTYY*LVPCALFCGCRREGRPCEHLV 347
           H + YY + P   +C CRR+   C HLV
Sbjct: 278 HKMLYYDVDPFLFYCMCRRDEYGC-HLV 304


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -3

Query: 372 SFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKPHYDIYRNNVSARSDTI 205
           SF  F N + +  T+  P+     +R +  +S  G  PK + D      + R+  I
Sbjct: 607 SFGIFNNDKKSNRTISTPSPRESFSRLQMVASSLGFRPKDNKDKESGGYNKRNSKI 662


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +1

Query: 280 TSLFLARYSVGVGG-RVDRVNI*SGVPKCSK**LTARGEKNDSYSVQMISQLITNLFELS 456
           TSL L RY  G+      R N  S  P  +   +++RG  + S  + ++  +      L 
Sbjct: 74  TSLILGRYKQGISAVEACRSNWRSIQPNINDS-ISSRGHPDASCMLDVLGTMYKKAGFLK 132

Query: 457 LHTSCTLLAISIN 495
             T C + A+SIN
Sbjct: 133 KATDCFVEAVSIN 145


>SPBC21B10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 381 RQLSFRAFRNTRLNVHTVDPPAYTHRITRKEQASSRSGNEPKP 253
           +QL+     +T L +H++D P+    +TR     S+SG EP P
Sbjct: 136 QQLTVNPKADTSLIIHSLDDPSLYAVVTR----YSKSGIEPGP 174


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 385 EPSVIISSISEHQTKCSH 332
           +P + IS + EH++ CSH
Sbjct: 427 KPFLSISKLQEHESSCSH 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,130
Number of Sequences: 5004
Number of extensions: 49045
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)