Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2271
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   1.4  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   3.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   8.8  

>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect(2) = 1.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 517 AWVWQFWLLL 488
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 529 GKLLAWVWQFWLL 491
           G  LA +WQ WLL
Sbjct: 196 GATLADIWQPWLL 208


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 529 GKLLAWVWQFWLLL 488
           G  ++W W+FW+LL
Sbjct: 189 GSSISWRWEFWILL 202


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 564 PVFLGFGAIFNLENCWLGFGSFG 496
           P F GFG+  N  N   G G FG
Sbjct: 333 PAFSGFGSTTNTTNTGTGTGLFG 355


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 517 AWVWQFWLLL 488
           +W WQFWLL+
Sbjct: 238 SWRWQFWLLM 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 882,051
Number of Sequences: 5004
Number of extensions: 9599
Number of successful extensions: 28
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)