Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2270
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   1.3  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
 Frame = -2

Query: 466 YEFVQPLMNLKHIIST*YLRVFLLIIPF----MYVITLQN*LIRIQLFI*DRRNNCF*PN 299
           +EFV P+M L  IIS   +     I PF    + V  L+N L++  +     RN  +   
Sbjct: 266 FEFVSPMMILLFIISDCCIHSLKEIQPFKCPSIMVKDLENSLLQSNI-----RNVGYEKK 320

Query: 298 DV*FTCN*LINYCYSLFRNCSDVC*ASMFLFASW 197
           ++ +  +   N  +  + NC+D   +  + F+SW
Sbjct: 321 NLYYISSAFSNLLHCRYFNCNDRLRSFYYRFSSW 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,980
Number of Sequences: 5004
Number of extensions: 37174
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)