Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2270
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical pr...    32   0.23 
Z81047-6|CAB02833.2|  381|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>U00063-5|AAK18963.1|  182|Caenorhabditis elegans Hypothetical
           protein F56C9.8 protein.
          Length = 182

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +3

Query: 15  PQNDYRLNPIELHHTDYTKLTVPRCAPKGFSPLPRKITRFSDFPS*LTSFLISTPPTSCY 194
           P +D+  NP    + DY         P  F+P+P  +T++S  P   ++  + TP T  Y
Sbjct: 78  PASDFPYNPAPTQNYDYNAPIRTPVNPTSFTPVP-SVTQYSTQPQQYSNVPLVTPTTQQY 136


>Z81047-6|CAB02833.2|  381|Caenorhabditis elegans Hypothetical
           protein C41G6.8 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/50 (22%), Positives = 31/50 (62%)
 Frame = -3

Query: 351 YEYNYSYETDEITVFNRTTYNSHVIS*STIVTHYFVTVLMFVKQVCFCSL 202
           Y+Y+  Y+  + T++N +T  +  +  +TI+ ++F  +++  K++  C++
Sbjct: 19  YDYDTDYDIYK-TIYNISTKTNLYLEIATIIVNFFHLIVLLQKEMRLCAV 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,410,994
Number of Sequences: 27780
Number of extensions: 212223
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)