Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2269
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.1
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.1
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 26 5.5
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 25 7.2
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 7.2
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ... 25 9.5
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 9.5
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 9.5
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 25 9.5
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 550 LMDWCQSPYKIEAAYCKVYHLFQRLLVVVE 461
L+ W Q P K+ ++ + HLFQ+ + + E
Sbjct: 2751 LIKWHQLPEKVNQSHYSLLHLFQQFVELQE 2780
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 439 LFAEYTHPQQPLTDAEKDDKLYNMLP 516
LF+ Y H Q D LYNM+P
Sbjct: 148 LFSSYPHAAQARVDPSISKDLYNMVP 173
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 641 YWPSFLISDTISLETCWQNDNISQN 567
YWP+F S T + + ++NDN N
Sbjct: 29 YWPAFQQSHTFNSMSVFKNDNAIAN 53
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 647 FGYWPSFLISDTISLETCWQNDNI 576
FG+ PS + T++ E C+QN N+
Sbjct: 94 FGHDPSVHTAATLASEMCYQNKNM 117
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 208 FYWHNNYSQYIGSCLKWKSV 267
F+W NN+S ++ SCL + SV
Sbjct: 94 FFWRNNHSVFV-SCLIYVSV 112
>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = -3
Query: 259 SILNNYLCIESNYYASKTY*NYFTNHCFIILFYFYKYALKMKL*NNSRISKN 104
SILNN +C E+ Y + Y + ++H + Y ++ L+ KL +N +++N
Sbjct: 37 SILNNQVCFEAIKYIQRHYFSSQSHH----VTYLHQSPLE-KLVSNGVVNEN 83
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 174 LFYFIFISML*K*NYKIIRESLKTP*LTEMKMYSFYNFL 58
LFYF F S+ I++E+L+ P ++ + F++FL
Sbjct: 34 LFYFFFGSLTFSIEVSILKETLEKP--LQIITFLFFSFL 70
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -3
Query: 553 HLMDWCQSPYKIEAAYCKVYHLFQRLLVVVEDVCT 449
H++++ S ++ ++C LF+ + V+V D+ T
Sbjct: 1199 HMLNFISSTLYLKVSFCSSNFLFKTISVLVYDLIT 1233
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = -3
Query: 595 AGKTTIYPRIFHSFHLMDWCQSPYKIEAAYCKVYHLFQRLLVVVEDVCTLQIASSGASVQ 416
AG T + H + D + A+ RLL D+CTLQI+ S +
Sbjct: 457 AGDTLMSSEESHQLYDSDVMDCCFSFLASILTHSIALPRLLRTKIDLCTLQISLSNPTST 516
Query: 415 VGREMRNL 392
V M NL
Sbjct: 517 VLISMHNL 524
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 593 WQNDNISQNFSFISLDG 543
WQ +N+++ SF+ LDG
Sbjct: 69 WQKENLNKEDSFVLLDG 85
>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 209 NVLKLFHKSLFYYFIL 162
N+L+ H+S F+YFIL
Sbjct: 347 NLLEHLHQSFFFYFIL 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,847
Number of Sequences: 5004
Number of extensions: 47342
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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