Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2269
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1705 + 39312648-39314246                                         29   3.2  
01_03_0010 - 11608537-11608786,11608816-11608940,11609152-116092...    29   4.3  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    28   5.6  
03_05_0742 + 27310404-27310457,27311281-27311286,27311350-273114...    28   7.5  

>01_06_1705 + 39312648-39314246
          Length = 532

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +1

Query: 529 VIGTSPSSEMNEK-FWDILSFCQQVSKLM 612
           V+G+S +S + +K FWD+L  C+Q  + M
Sbjct: 91  VVGSSETSRVRKKRFWDVLESCKQKVEAM 119


>01_03_0010 -
           11608537-11608786,11608816-11608940,11609152-11609217,
           11609741-11609872,11610507-11610608,11610743-11610940,
           11611015-11611161,11611321-11611431,11613241-11613780,
           11613847-11614003,11614148-11614297,11614375-11614514,
           11615346-11615468,11615561-11615677,11617184-11617357,
           11617768-11617909,11618076-11618194,11619773-11619955
          Length = 991

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 184 HCFIILFYFYKYALKMKL*NNSRISKNALIN*DENVQFLQFP 59
           H  I +  + + +L +K+  NS  SK  L+N  ENV+ L++P
Sbjct: 284 HFKIYILLYKEVSLALKI--NSMYSKQRLLNIHENVKVLRYP 323


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -3

Query: 175 IILFYFYKYALKMKL*NNSRISKNALIN*DENVQFLQFP 59
           I +  + + AL +K+  NS  SK  L+N  ENV+ L++P
Sbjct: 403 IYILLYKEVALALKI--NSLYSKQKLLNIHENVKVLRYP 439


>03_05_0742 +
           27310404-27310457,27311281-27311286,27311350-27311469,
           27311597-27311695,27311787-27311795,27311843-27311980,
           27312084-27312218,27312308-27312517,27312592-27312798,
           27312891-27313010,27313079-27313198,27313279-27313401,
           27313501-27313605,27313764-27313908,27314658-27315148,
           27315236-27315268,27315556-27315637,27315747-27315907,
           27316021-27316206,27316294-27316476,27316573-27316751,
           27317009-27317105
          Length = 1000

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 595 AGKTTIYPRIFHSFHLMDWCQSPYK--IEAAYCKVYHLFQRLLVV 467
           A KT  +PRIFH   L    Q  Y+    A Y +V  + Q L+ V
Sbjct: 779 AYKTNFFPRIFHVESLEKTAQDDYQKLASAVYLQVSTISQALIFV 823


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,848,397
Number of Sequences: 37544
Number of extensions: 235289
Number of successful extensions: 525
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)