Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2268
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0103 - 19083663-19083856,19083962-19084169,19084239-190843... 33 0.22
08_02_0707 - 20212190-20214592 30 2.0
05_07_0219 - 28474661-28475146,28475979-28476644 30 2.0
05_02_0093 + 6530930-6531048,6531077-6531377 29 2.6
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 29 3.5
02_02_0616 - 12160899-12161506,12161698-12161821,12161974-121620... 29 3.5
06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597 28 6.1
08_02_0472 - 17573865-17574034,17575145-17575229,17575339-175754... 28 8.1
08_01_1010 - 10215625-10216335,10216372-10216473 28 8.1
07_01_0157 + 1109499-1111022 28 8.1
03_06_0355 + 33340219-33340322,33340408-33340549,33340657-333407... 28 8.1
01_02_0063 - 10746968-10747783,10747995-10748222 28 8.1
>11_05_0103 -
19083663-19083856,19083962-19084169,19084239-19084323,
19084591-19084865
Length = 253
Score = 33.1 bits (72), Expect = 0.22
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 677 GWLLSRRCHHNNHSSRWACKSSLGLWISSRTAQWWSWVGLEWTV*PWWKWWAG 519
G ++ R + +N W K +G W++ WW WV + V PW WW G
Sbjct: 131 GHMVKRPDNKDNKGLEWWVKEIVGPWVT-----WW-WV--KEIVGPWVTWWRG 175
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 487 KEDPTQNNDHSPAHHFHHGQTVHSSPTQDHH*AVREDIQSPSED 618
KE+ + + H HH HH + H + DH +DI + S D
Sbjct: 574 KENHSHCHGHDHHHHHHHDHSEHHQQSGDH---AHQDISNISSD 614
>05_07_0219 - 28474661-28475146,28475979-28476644
Length = 383
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/38 (44%), Positives = 18/38 (47%)
Frame = +3
Query: 573 PPLSCTRRYPKPQ*GLTGPS*TMIIMMTATRK*PTGTP 686
PPLS T +P P T S T TAT PT TP
Sbjct: 79 PPLSATTPHPPPPSPATSSSRTATATATATPTSPTPTP 116
>05_02_0093 + 6530930-6531048,6531077-6531377
Length = 139
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 463 AETKKSVQKEDPTQNNDHSPAHHFHH 540
AE K ++KED + +PAHH HH
Sbjct: 105 AEKKHGIRKEDAINILEVTPAHHPHH 130
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 445 PNACNDAETKKSVQKEDPTQNNDHSPAHHFHHGQTVHSSPTQDHH 579
PN +++ DP +++ H HH HHG Q HH
Sbjct: 16 PNFLLHMAQQQAAPPHDPQEHHHHH--HHGHHGHHHEQQQQQQHH 58
>02_02_0616 -
12160899-12161506,12161698-12161821,12161974-12162083,
12162119-12162271,12162545-12162779
Length = 409
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -2
Query: 590 RTAQWWSWVGLEWTV*PWWKWWA 522
R A+W+ VGL W V W +W A
Sbjct: 143 RAAKWFRGVGLPWQVITWPQWCA 165
>06_03_1252 + 28753584-28753883,28754693-28754886,28755192-28755597
Length = 299
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -2
Query: 623 CKSSLGLWISSRTAQWWSWVGLEW 552
C G W+ R WWSW+ L W
Sbjct: 245 CAGGGGGWMRRRM-DWWSWMTLNW 267
>08_02_0472 -
17573865-17574034,17575145-17575229,17575339-17575461,
17575566-17575707,17575789-17575889
Length = 206
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 542 PWWKWWAGLWSLFCV 498
P + WW G+ SLFC+
Sbjct: 160 PHFAWWVGIGSLFCI 174
>08_01_1010 - 10215625-10216335,10216372-10216473
Length = 270
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 341 STVTYSPASREPSFFTRDYLLESPVTKTYDEEYQYLTPVTTPKP 472
+++ Y+P++ P + DY SP + EY TP +P P
Sbjct: 175 ASLDYTPSTPPPRAASPDYTPLSPPPRAASPEYSPSTPPPSPVP 218
>07_01_0157 + 1109499-1111022
Length = 507
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 445 PNACNDAETKKSVQKEDPTQNNDHSPAHHFHHGQTVHSSPTQ 570
P+ + ET + + PTQ+ P H +H ++HS+ T+
Sbjct: 242 PHFKSTTETVRKELSQLPTQDFSWVPRSHSYHWDSIHSTVTE 283
>03_06_0355 +
33340219-33340322,33340408-33340549,33340657-33340779,
33340875-33340959,33342578-33342747
Length = 207
Score = 27.9 bits (59), Expect = 8.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 542 PWWKWWAGLWSLFCV 498
P + WW G+ SLFC+
Sbjct: 161 PHFAWWVGIGSLFCI 175
>01_02_0063 - 10746968-10747783,10747995-10748222
Length = 347
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 213 PVGIGLAKVETLGEVKSVGSSKIPRVVS 130
PV IGLA + L E+K+ + P VVS
Sbjct: 98 PVNIGLAAFDLLEEIKAAVEKRCPGVVS 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,558
Number of Sequences: 37544
Number of extensions: 418477
Number of successful extensions: 1553
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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