Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2267
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   1.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -3

Query: 390 IIAVPNIRRACRSVELLEHWPPEQKRQHVNG*LALYYLFLPQSSRAFRIKGWEKR 226
           IIA+P++  A +  ++L    P Q  + +    AL+    P +     IKG++K+
Sbjct: 74  IIAIPDVVEAAKDADILTFVVPHQFIKRICS--ALFGKIKPTAIGLSLIKGFDKK 126


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 323 SGGQCSKSSTLRHARLIFGTAM 388
           +GG  SKS TL H+  ++G A+
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDAL 613


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +2

Query: 287 SANYPFTCCLFCSGGQCSKSSTLRH 361
           SA   FTC L C    CSK+S  RH
Sbjct: 1   SAKKLFTCQL-CGKVLCSKASLKRH 24


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 351 VELLEHWPP 325
           +EL+EHW P
Sbjct: 496 IELIEHWMP 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,300
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)