Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2265
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 29 0.32
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.74
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 28 0.74
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 27 1.7
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr... 27 2.3
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 5.2
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.9
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 25 6.9
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.1
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = -2
Query: 420 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 307
DGFV++LPYD V + L R+G+ + W A F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.74
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 113 TASPL*TTNX*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCPTK*SELWSHP--TWA 286
T++PL TTN CT+S TS P+ T TS+ L T T+ P + + S P T
Sbjct: 441 TSTPLATTN----CTTS-TSVPYTSTPVTSTPLTTTNCTTSTSIPYTSTPVTSTPLTTTN 495
Query: 287 *TTNTEL 307
TT+T +
Sbjct: 496 CTTSTSV 502
Score = 27.5 bits (58), Expect = 1.3
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 113 TASPL*TTNX*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCP 247
T++PL TTN CT+S TS P+ T TS+ L T T+ P
Sbjct: 464 TSTPLTTTN----CTTS-TSIPYTSTPVTSTPLTTTNCTTSTSVP 503
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 113 TASPL*TTNX*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCP 247
T++PL TTN CT+S TS P+ T TSS+ T+ P
Sbjct: 487 TSTPLTTTN----CTTS-TSVPYTSTPVTSSNYTISSSTPVTSTP 526
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +2
Query: 113 TASPL*TTNX*WTCTSSPTSNPHAPTGATSSSLNTLLGGKKTTCP 247
T++PL TTN CT+S TS P+ T TSS+ T+ P
Sbjct: 546 TSTPLATTN----CTTS-TSVPYTSTPVTSSNYTISSSTPVTSTP 585
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 28.3 bits (60), Expect = 0.74
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 133 DQXVMDV-YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 282
D+ ++V YL+ +L PN Y Q A + +DY E IRI+E V
Sbjct: 24 DEIFLNVGYLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 401 SHMTRFTNDSNELVYSLWMFMIGQ 330
SH +F ND E Y W F+ Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226
>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 162
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 283 GMNNEYRISLAKKGGGCPIMNIHS 354
G++NE I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = -2
Query: 261 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 163
+D GH + PP+ + +++A + +C ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +1
Query: 13 FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 120
F + S+ P +LIVN + + WT +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 325 GGCPIMNIHSEYTNSFESFVNRVIWENFYK 414
GG P+ + SE + F ++ I+E +YK
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK 428
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 24.6 bits (51), Expect = 9.1
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 107 LRTASPL*TTNX*WTCTSSPTSNPHAPTGATSSSL 211
L ++S L +++ T ++SPTS+ + ATSSSL
Sbjct: 85 LTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSL 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,659
Number of Sequences: 5004
Number of extensions: 45625
Number of successful extensions: 123
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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