Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2264
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   1.3  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.7  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.9  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.8  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.9  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   8.9  

>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 191 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIP 370
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 371 GIK 379
            ++
Sbjct: 552 PLR 554


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 554 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEG 733
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 734 TLLK 745
           TLLK
Sbjct: 385 TLLK 388


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 248 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 427
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 428 -TQGLDDLAQRCAQYKKDGCHFAKW 499
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 77  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 241
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 347 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 454
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 490  RQVALRAEDRPQHPLVPSYPGKRQCSRPLRF 582
            R++++R+     HP V  YP  R   R  RF
Sbjct: 3347 RRLSIRSNGGTIHPFVIQYPSARNSRREERF 3377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,996
Number of Sequences: 5004
Number of extensions: 67762
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)