Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2262
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054...    30   1.6  
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582...    30   2.1  
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82...    29   3.7  
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    28   8.5  

>05_04_0028 +
           17302359-17302445,17303887-17303952,17305415-17305489,
           17305638-17305737,17305819-17305865,17305937-17305994,
           17306161-17306210,17306417-17306473,17306561-17306703,
           17306793-17306834,17307083-17307124,17308239-17308272,
           17308342-17308443,17310373-17310652,17311202-17311332,
           17311676-17311773,17312525-17312717
          Length = 534

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 663 SQCPTKLRSLSTNPTRS--K*RSPTRSPLKCQYQTLTKSSRKSLTPSR 526
           S  P K RS S + +RS  K RSP+RSP         KS+ KS   SR
Sbjct: 235 SHSPVKERSRSASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSR 282


>02_01_0782 +
           5827364-5827441,5827733-5827787,5828761-5828849,
           5829167-5829191,5829645-5829683,5830316-5830433,
           5830857-5831023,5831155-5831518,5831589-5831701,
           5832185-5832310,5832436-5833339,5833694-5834036
          Length = 806

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
 Frame = -1

Query: 711 ALPRPMLKSPTQ*PYTSQCPTKLRSLSTNPT-----RSK*RSPTRSPLKCQYQTLTKSSR 547
           +LPR + +SP      S    + RS+S +       RS+ RS  RSP++        +  
Sbjct: 500 SLPRSVSRSPVARRSRSPVKARTRSISRSSARSLQRRSRSRSLERSPVRKSVSRSPPTMD 559

Query: 546 KSLTPSRRK-CLMKSKCLLTSPTRSTRRFKCRSSKK 442
           K  + SR    L   + +  SP R  RR   RS +K
Sbjct: 560 KGRSISRTSGRLPLRRSISRSPDRPYRRIPSRSPRK 595



 Score = 27.9 bits (59), Expect = 8.5
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
 Frame = -1

Query: 690 KSPTQ*PYTSQC--PTKLRSLSTNPTR-----SK*RSPTRSPLKCQYQTLTKSSRKSL-- 538
           +SP + P  S+   P + +S+S +P R     SK RSP R   K    +  +S  KSL  
Sbjct: 446 RSPVRAPERSESRSPPREKSISMSPQRRSARRSKSRSPLRE--KSVSMSPRRSMSKSLPR 503

Query: 537 TPSRRKCLMKSKCLLTSPTRSTRRFKCRSSKK 442
           + SR     +S+  + + TRS  R   RS ++
Sbjct: 504 SVSRSPVARRSRSPVKARTRSISRSSARSLQR 535


>10_01_0062 -
           818396-818538,819482-819693,819936-820420,820540-820696,
           820787-820924,821127-821703,821978-822018,822679-822809
          Length = 627

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 231 GCVLCINWLL*ALFKATFSLVYRSREFVSETRSCVVIICYYFVSFYMLVI 82
           GC+ C    L   F  T ++ Y S   +     CV+++ +  V+F +LV+
Sbjct: 356 GCLFCGPLFLTFCFLNTVAIAYNSTAALPFGTICVIVLIWTLVTFPLLVL 405


>03_06_0311 +
           33054022-33054118,33056109-33056353,33057058-33057398,
           33057488-33057538,33057623-33057695,33058229-33058333,
           33060124-33060206,33061209-33061249,33061659-33063120,
           33063368-33064847,33064958-33065122,33065232-33065424,
           33065502-33065613,33065702-33065849,33065951-33066148,
           33066234-33066512,33066612-33066773,33066872-33067090,
           33067481-33067612
          Length = 1861

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -1

Query: 600 PTRSPLKCQYQTLTKSSRKSLTPSRRKCL----MKSKCLLTSPTRSTRRFKCRSSKK 442
           P  SP+K + ++L+  +  +   S +KCL     K+ CL   P  ST R    +SKK
Sbjct: 71  PVASPVKRKERSLSSLTIPAPQVSIQKCLTKRRTKASCLRNFPLHSTSRGSKDTSKK 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,368
Number of Sequences: 37544
Number of extensions: 292379
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)