Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2262
         (714 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    29   2.5  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    29   4.4  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>U88170-2|AAB42250.1|  203|Caenorhabditis elegans Hypothetical
           protein C10G11.9 protein.
          Length = 203

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -1

Query: 642 RSLSTNPTRSK*RSPTRSPLKCQYQTLTKSSRKSLTPSRRKCLMKSKCLLTSPTRST--- 472
           RS S+  +RS+ R  TRS  +   ++ + S R S   SRR+   K++    S  + T   
Sbjct: 125 RSRSSKRSRSRSRPRTRSGSRSSSRSRSGSRRSSRRRSRRRSSSKARGRRASTAKKTPAK 184

Query: 471 RRFKCRSSKK 442
           RR + RS +K
Sbjct: 185 RRSRSRSQQK 194


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -1

Query: 618 RSK*RSPTRSPLKCQYQTLTKSSRKSLTPSRRKCLM---KSKCLLTSPTRSTRRFKCRSS 448
           RSK RS +RSP + + ++ ++S  +S +P+ R   +   +S+    S +RS  R + RSS
Sbjct: 169 RSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSS 228


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
 Frame = -1

Query: 618 RSK*RSPTRSPLKCQYQTLTKSSRKSLTPSRRKCLM---KSKCLLTSPTRSTRRFKCRSS 448
           RSK RS +RSP + + ++ ++S  +S +P+ R   +   +S+    S +RS  R + RSS
Sbjct: 169 RSKSRSRSRSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSS 228


>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 487 PYPVYKEVQVPLVKEVPYPVKYHVPI 410
           P PV + V VP+  +VP P++  VP+
Sbjct: 149 PQPVIQHVPVPVPVQVPVPIRVPVPV 174


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
 Frame = -1

Query: 705 PRPMLKSPTQ*PYTSQCPTKLRSLSTNPTRSK*RSPTRSPLKCQYQTLTKSSRKSLTP-- 532
           PR   +SP +    S  P + R +S +P R   RSP R  +        +  ++S +P  
Sbjct: 100 PRKRSRSPPRRTRRSPSPPRRRRISRSPVRRS-RSPPRRQVSRSRSPPPRRQQRSRSPPP 158

Query: 531 -SRRKCLMKSKCLLTSPTRSTRRFKCRS 451
             RR+   +SK    SP R   R + RS
Sbjct: 159 AKRRRDQSRSK----SPPRRNYRQRQRS 182


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = -1

Query: 666 TSQCPTKLRSLSTNPTRSK*RSPTRSPLKCQYQTLTKSSRKSLTPSRRKC-LMKSKCLLT 490
           T+Q P+   S++   T+    SP+R+  K    T T ++ +  TP+R    L+++   +T
Sbjct: 579 TTQVPSTTTSVTVPSTQKATPSPSRTTKKSTTTTSTTATPRQATPTRNPLPLLQTMSAIT 638

Query: 489 S-PT 481
           + PT
Sbjct: 639 AFPT 642


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,323,107
Number of Sequences: 27780
Number of extensions: 264067
Number of successful extensions: 813
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)