Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2262
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.31 
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    24   1.2  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    24   1.2  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   1.2  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    24   1.2  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 575 WHFNGDRVGLLYFDLVGFVD 634
           W FNGD+V L  ++   FVD
Sbjct: 172 WTFNGDQVSLALYNNKNFVD 191


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 475 YKEVQ---VPLVKEVPYPVKYHVPIYF 404
           YK++Q   +  ++++P PV   VP+Y+
Sbjct: 97  YKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 475 YKEVQ---VPLVKEVPYPVKYHVPIYF 404
           YK++Q   +  ++++P PV   VP+Y+
Sbjct: 97  YKKLQYYNINYIEQIPVPVPVPVPVYY 123


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 475 YKEVQ---VPLVKEVPYPVKYHVPIYF 404
           YK++Q   +  ++++P PV   VP+Y+
Sbjct: 97  YKKLQYYNINYIEQIPVPVPIPVPVYY 123


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 475 YKEVQ---VPLVKEVPYPVKYHVPIYF 404
           YK++Q   +  ++++P PV   VP+Y+
Sbjct: 97  YKKLQYYNINYIEQIPVPVPVPVPVYY 123


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -3

Query: 475 YKEVQ---VPLVKEVPYPVKYHVPIYF 404
           YK++Q   +  ++++P PV   VP+Y+
Sbjct: 330 YKKLQYYNINYIEQIPVPVPVPVPVYY 356


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 191 NNAHNNQLIHRTQP*NREQPN 253
           NN HN+Q  H ++  NR   N
Sbjct: 443 NNQHNDQAHHSSKSNNRHNNN 463


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 593 RVGLLYFDLVGFVDRDLNFVGHWLVYGHWVG 685
           R   L+ ++     R  N +   L+ GHW G
Sbjct: 264 RKATLFLNMASVFMRIFNLICMMLLIGHWSG 294


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 536 VRDFLDDFVRVWYWH 580
           V  F+ DFV+V  WH
Sbjct: 126 VPSFVADFVKVLSWH 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,458
Number of Sequences: 438
Number of extensions: 3576
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)