Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2259
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    31   0.82 
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    29   2.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    28   4.4  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    28   4.4  
AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine r...    27   7.7  

>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
           protein F21E9.1 protein.
          Length = 1170

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +3

Query: 138 APIVIASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNS 275
           +P+ I  +Y PP     +   L + +E+ + + S  ILAGDLN   I W+S
Sbjct: 433 SPLSIFLIYRPPCCSVSENAALIAHLESYIPL-SRTILAGDLNFPQINWSS 482


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 180 IVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTP 290
           I L S I ALL   +S ++ GDLNC     ++   TP
Sbjct: 2   IALVSFILALLAPQASAVIGGDLNCTSYNGSAFVWTP 38


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 150 IASVYLPP-----DKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNS 275
           I++VY+PP     +   L +D   +    S  I++GD+N  H  W+S
Sbjct: 3   ISNVYVPPRSSSSNHARLMTDFSNIFQTKSKSIISGDVNAHHSAWHS 49


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 227   RAPHTEQRLDITA*NDLIRWKINGRDND 144
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 227   RAPHTEQRLDITA*NDLIRWKINGRDND 144
             R  + E   ++ A +D + WK+NG+D D
Sbjct: 13887 RGDNVEIEAELLAEDDTVTWKVNGKDAD 13914


>AF022971-13|AAG23979.1|  325|Caenorhabditis elegans Serpentine
           receptor, class h protein247 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 292 FGVVVCEFHLMCLQFRSPARMT 227
           F + VC F   C+ F++P RMT
Sbjct: 26  FEIPVCTFGAYCILFKTPERMT 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,597,219
Number of Sequences: 27780
Number of extensions: 262758
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)