Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2256
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   8.7  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   8.7  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.7  

>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 320 CYIVMHRILRSKCIVSDSKYQLQG 249
           CY V H  LR KC+V     +++G
Sbjct: 5   CYAVYHPALRLKCLVRKGLGKIKG 28


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 518 NIPEDGGEYSLLECCGNSGNHSLSRTQRLYTRT*VLRAGELIDPSIFG 661
           ++P+   E+S       + NHS +  QR Y R    R+  L +PS +G
Sbjct: 445 DLPQKNSEFSETNAMNQTSNHSHADGQRYY-RPEQDRSQRLRNPSDYG 491


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -1

Query: 747 PVTSNNRPIEYQYDSSN*TYFKFDITQNMPKIEGSINSPALKT 619
           P TS   P    Y  +N  Y    I  +     GSI SP+L T
Sbjct: 312 PTTSAYNPAPPAYGMANPAYGSTGIRSSSIPSSGSIRSPSLTT 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,143,604
Number of Sequences: 5004
Number of extensions: 64520
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)