Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2255
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 31 0.14
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 31 0.14
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 31 0.14
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 31 0.14
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 31 0.14
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 31 0.14
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 31 0.14
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 31 0.14
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 31 0.14
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 31 0.14
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 31 0.14
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 5.4
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 31.5 bits (68), Expect = 0.14
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = +2
Query: 14 RTHIDIYNENAPLILRYKF*GLSIVTTITLQRYNLLHSIDKLIVQQLSNLYTCLLKVRAN 193
RT I Y+E LI G+ ++T I L+R+ I K I + + N +TC + N
Sbjct: 913 RTIIKKYHEEGKLIHP----GIELLTNIILRRFTW-KGIRKQIQEYVQNCHTCQINKSRN 967
Query: 194 *KSYG 208
K YG
Sbjct: 968 HKPYG 972
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 738 LRPQNLYLKVAHLRCRYLWAPVTT*HQ 658
L + L K +LRC+YL++ +TT H+
Sbjct: 589 LMEEELRGKFINLRCKYLFSKLTTLHE 615
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,197,852
Number of Sequences: 5004
Number of extensions: 64843
Number of successful extensions: 147
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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