Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2255
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical pr...    33   0.31 
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    30   2.2  
U88173-1|AAK21381.1|  264|Caenorhabditis elegans Temporarily ass...    28   6.7  

>Z73899-6|CAA98078.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK829.8 protein.
          Length = 345

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 28/92 (30%), Positives = 38/92 (41%)
 Frame = +2

Query: 158 NLYTCLLKVRAN*KSYGFNNCSAIYVSAYELFSPVTHAQSIIYLRCTCP*SGLTRTAITP 337
           NL T + +   +    GFNNC  I+V    LF     AQ++I +RC       T   +  
Sbjct: 52  NLITSVTEAVVSTAIEGFNNCLIIFVPHGLLFEYPLLAQNLISIRCGM--CAYTFALLAV 109

Query: 338 HLISQYAVR*HQVCREHKKCTGLNVKTNFLKS 433
           H + +Y      VCR          KT FL S
Sbjct: 110 HFLYRYLA----VCRPLAIAHFFRPKTIFLNS 137


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 500 TLIHYSSMCFSHKKKTIVLFPCKTLENLFLRSTLCI 393
           T + Y  + FS   KTI +F C+++ N+FL  +L +
Sbjct: 238 TYLIYGKLIFSESYKTIWMFWCRSIFNVFLPFSLLL 273


>U88173-1|AAK21381.1|  264|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 83 protein.
          Length = 264

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -3

Query: 183 TFKRHVYKFDSCCTISLSIECSKLYRCNVIVVTILRP*NLYLKM 52
           ++KR++  F S  +  +S+    LY  N I++T   P N++LK+
Sbjct: 179 SYKRYLGYFSSLLSGRISVNSDPLYLHN-IILTFFEPINVFLKI 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,846,234
Number of Sequences: 27780
Number of extensions: 376330
Number of successful extensions: 736
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)