Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2254
         (442 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.4  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 FC-EALLLLGSVLATPHGLSPE 317
           FC   +++LGS++ TP  ++PE
Sbjct: 743 FCITEVMMLGSIVGTPVHMAPE 764


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 255 FC-EALLLLGSVLATPHGLSPE 317
           FC   +++LGS++ TP  ++PE
Sbjct: 781 FCITEVMMLGSIVGTPVHMAPE 802


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 SRFRFGGRFCEALLLLGSVLATPHGLS 311
           S FRF    C  LLL+ +++  P  +S
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAIS 111


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 SRFRFGGRFCEALLLLGSVLATPHGLS 311
           S FRF    C  LLL+ +++  P  +S
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAIS 111


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 231 SRFRFGGRFCEALLLLGSVLATPHGLS 311
           S FRF    C  LLL+ +++  P  +S
Sbjct: 85  SSFRFYWDLCMLLLLVANLIILPVAIS 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,433
Number of Sequences: 438
Number of extensions: 2150
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)