Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2250
(626 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical pr... 33 0.22
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 33 0.22
AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein. 30 1.2
AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle defec... 30 1.2
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 3.6
Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr... 27 8.3
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical... 27 8.3
>U41017-1|AAC48211.1| 343|Caenorhabditis elegans Hypothetical
protein T26C11.2 protein.
Length = 343
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/98 (21%), Positives = 36/98 (36%)
Frame = +2
Query: 332 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 511
P+ K P+P K P P+ +P+ + P P +P K + P
Sbjct: 44 PKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSKPKSEPF 103
Query: 512 TCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAPYP 625
P +P+ + P + +FP + +P P P
Sbjct: 104 PNPMPFPKPKP-MPKHKPKPFPKPMLFPKPMPIPKPMP 140
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/99 (20%), Positives = 33/99 (33%)
Frame = +2
Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALP 508
+P K+ P P K P P+ +S P+P + + +P K P
Sbjct: 1 MPEPKSKPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFP 60
Query: 509 STCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAPYP 625
+ P+ P + +FP + P P P
Sbjct: 61 KPMLFPKPMPK-----HKPKPFPKPMLFPKPMPFPKPMP 94
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Frame = +2
Query: 326 SLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGAL 505
S P+ + P P P+P+ + +P+ + P P + P K
Sbjct: 24 SKPKSEPFPSPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLF 83
Query: 506 PSTCPSRQTRPRQGICARTLP-PLKRKFMFPVEVHVPAPYP 625
P P + P+ + P P+ P+ H P P+P
Sbjct: 84 PKPMPFPKPMPKSKPKSEPFPNPMPFPKPKPMPKHKPKPFP 124
Score = 28.7 bits (61), Expect = 3.6
Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Frame = +2
Query: 329 LPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGA-- 502
+P K P+P K P P+ +P + P P +P K +
Sbjct: 107 MPFPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEP 166
Query: 503 LPSTCPSRQTRPRQGICARTLP-----PLKRKFMFPVEVHVPAPYP 625
P+ P + P+ + +P P + +FP + +P P P
Sbjct: 167 FPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMP 212
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 32.7 bits (71), Expect = 0.22
Identities = 27/88 (30%), Positives = 40/88 (45%)
Frame = +2
Query: 320 SCSLPRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEG 499
S S PRR+ P ++ PR + RSP+ PR + R + R+ + P R+
Sbjct: 88 SASPPRRRRDDSPRKRSRSPPRRTRRSPSPPRRR-------RISRSPVRRSRSPPRRQVS 140
Query: 500 ALPSTCPSRQTRPRQGICARTLPPLKRK 583
S P RQ R +R+ PP KR+
Sbjct: 141 RSRSPPPRRQQR------SRSPPPAKRR 162
>AY714241-1|AAV68307.1| 529|Caenorhabditis elegans SPD-1 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 482 PSRKEGALPSTCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAP 619
P+R++ P T + T+P +RT P+ ++ M P + P
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASSTP 515
>AC024756-3|AAT81176.1| 529|Caenorhabditis elegans Spindle
defective protein 1 protein.
Length = 529
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 482 PSRKEGALPSTCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAP 619
P+R++ P T + T+P +RT P+ ++ M P + P
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASSTP 515
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 29.1 bits (62), Expect = 2.7
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 365 KENPLP-RESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQTRPR 541
+E PL +ARS +C C LP + QGT + P K GA P P RP
Sbjct: 68 RELPLSANRTARSTYNEQCAGCCLPGPQGPQGTPGKPGK-PG-KPGA-PGQ-PGTPGRPP 123
Query: 542 QGICARTLPP 571
Q C T PP
Sbjct: 124 QQPCEPTTPP 133
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/98 (23%), Positives = 35/98 (35%)
Frame = +2
Query: 332 PRRKAHPLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPS 511
P+ K P P K NP P + P+ + P P + + P+ K P
Sbjct: 185 PKPKPKPKPKPKPNPKPEPKPKPKPEPKPKPKPEPKPKPKPKPKPKPKPNPNPKPEPKPK 244
Query: 512 TCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAPYP 625
P + P+ ++ P K K + P P P P
Sbjct: 245 PKPKPKPEPKPKTKLKSEPKPKPK-LKPKPKPNPKPEP 281
>Z82282-3|CAB05275.1| 638|Caenorhabditis elegans Hypothetical
protein T07G12.3 protein.
Length = 638
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 509 WVRHLLFDWV-GLRYVNWYLDNLFNWVRDMFDN 414
W+ + DW+ G V+ YL N F +MFDN
Sbjct: 357 WLAWVAHDWIDGAARVDEYLVNYFKKHNNMFDN 389
>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
protein C35A5.8 protein.
Length = 1078
Score = 27.5 bits (58), Expect = 8.3
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +1
Query: 400 PNPTPLSNMSLTQL-KRLSRYQFTYRNPTQSKRRCLTQYMSQSTDPSPSRYMCQNLTPVE 576
P P SL QL RL++ ++TY+NPT+++ T+ DP S N+ +E
Sbjct: 94 PQFPPYLVTSLCQLFARLTKQEWTYQNPTENQTED-TKIEYPFRDPVDSLVKTINMDNIE 152
Query: 577 KKV 585
+ +
Sbjct: 153 ESM 155
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 27.5 bits (58), Expect = 8.3
Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 2/106 (1%)
Frame = +2
Query: 314 ESSCSLPRRKAHPLPGRKENPLPRESA-RSPT-LPRCQTCPLPS*RDCQGTSSRTATLPS 487
++ S+P P P E P P +A +P P + P P+ AT P+
Sbjct: 543 DAPSSVPEETPAPAPAADETPAPAPAAEETPAPAPAAEETPAPA----PAAEETPATAPA 598
Query: 488 RKEGALPSTCPSRQTRPRQGICARTLPPLKRKFMFPVEVHVPAPYP 625
+E P+ P+ P A P P PAP P
Sbjct: 599 AEE--TPAPAPAADETPAPAPAAEETPA-----PAPAVEETPAPAP 637
>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
protein Y51H4A.12 protein.
Length = 1677
Score = 27.5 bits (58), Expect = 8.3
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = +2
Query: 350 PLPGRKENPLPRESARSPTLPRCQTCPLPS*RDCQGTSSRTATLPSRKEGALPSTCPSRQ 529
P+ RK + R A +P Q P P Q T S R +G + PS
Sbjct: 722 PMDQRKRHSSGRYDALMGAMPLQQQPPPPPPSQFQHTDSIAHRPRGRPKG---TRHPSVA 778
Query: 530 TRPRQGICARTLPP 571
+P++ ARTLPP
Sbjct: 779 VQPQRSGGARTLPP 792
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,181,415
Number of Sequences: 27780
Number of extensions: 192107
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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