Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2245
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...   123   2e-29
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3...    38   0.002
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    27   2.0  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    27   2.6  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.1  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.1  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   6.1  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    25   8.0  
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch...    25   8.0  
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score =  123 bits (297), Expect = 2e-29
 Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 5/183 (2%)
 Frame = +1

Query: 22  MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIA----KLGYEKNSMFLDS 189
           MPLII+ G P SGKTTR+ ELK+  E++  + ++   +   I      L  EK + + +S
Sbjct: 1   MPLIIVSGYPSSGKTTRSNELKKALEDRIHQNIDNTKDYRVIIINDESLNIEKET-YRES 59

Query: 190 QKEKRVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHE 369
           + EK  RG L S   R + K   VI D  NYIKG+RY+LYC SK+  +T C I     H 
Sbjct: 60  KNEKAARGLLYSAVQRELSKSTFVICDALNYIKGFRYQLYCESKSMYTTHCVI-----HV 114

Query: 370 EAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPTD-NIDLENIY 546
              Q   ++ +++    Y ++V   L   R+EEPN   RWDSPLFTVL  D +  +++I+
Sbjct: 115 AVPQDLCRKFNSNKEQPYPDDVLEQL-MFRYEEPNGMTRWDSPLFTVLHDDASCPIDDIW 173

Query: 547 KVL 555
            VL
Sbjct: 174 SVL 176


>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 175

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/73 (30%), Positives = 43/73 (58%)
 Frame = +1

Query: 19  KMPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKE 198
           ++P IIICGTP +GKTT A+++ +  E ++    ++V E+      G+++     D  ++
Sbjct: 7   ELPNIIICGTPGTGKTTLAEQVAETTELENICIGDVVKENH--LHFGFDEKWKTYDVDED 64

Query: 199 KRVRGYLKSEAIR 237
           K V  YL+ + ++
Sbjct: 65  K-VLDYLEPKLLK 76


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +1

Query: 31  IIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAK-LGY-EKN--SMFLDSQKE 198
           I++ G P +GKT  A+++ +    +  K   IV+  E + K +G  E+N   +F D+++E
Sbjct: 307 ILLYGPPGTGKTLIARQIGKMLNAREPK---IVNGPEILNKYVGQSEENVRKLFADAERE 363

Query: 199 KRVRG 213
            R RG
Sbjct: 364 YRDRG 368


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 19  KMPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLG 159
           K+P + + G   SGKT+   EL   ++EK   TV  +  +EA+ K G
Sbjct: 36  KLPAVFLIGPSDSGKTSLFCEL--IYKEKK-TTVPSIEPNEAVWKYG 79


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
 Frame = +1

Query: 112 KTVEIVSEDEAIA--KLGYEKNSMFL-----DSQKEKRVRGYLKSEAIRLIGKDNVVILD 270
           +++ +V++D A+    +   KNS+ +      +  EK + G+ K  + R+ G   ++ L+
Sbjct: 10  RSLALVNKDHALMFHSVPQNKNSLSVCVAEFTALSEKPLEGFRKISSHRIYGTLGLIELE 69

Query: 271 GSNYI 285
           GSN++
Sbjct: 70  GSNFL 74


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 361 NHEEAW-QANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSP 498
           N ++ W + N    STD++  Y  E   ++    F  P+    +D P
Sbjct: 267 NLDDGWGETNGSWSSTDDTKHYKNEWAESINLDNFNRPSQQEDYDKP 313


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 530 SILSVGRTVKSGLSHRLLEFGSSNLNLVNALK-TSSVY 420
           SIL V  T  S  SH+ L F  S  N +NA   T S+Y
Sbjct: 224 SILPVSPTRDSTKSHKTLNFSPSRKNNLNARPLTMSLY 261


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = +1

Query: 31  IIICGTPVSGKTTRAKELKQFFEEKHGKTVEIV-SEDEAIAKLGYEKNSMFLDS--QKEK 201
           +I+ G P +GK T+A  +++ +   H  T +++ S+     +LG E   +        + 
Sbjct: 6   LILVGPPGAGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKEAKKIMDQGGLVSDD 65

Query: 202 RVRGYLKSEAIRLIGKDNVVILDG 273
            V G +K E +      N  ILDG
Sbjct: 66  IVTGMIKDEILNNPECKNGFILDG 89


>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
           Spo14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 103 KHGKTVEIVSEDEAIAKLGYEKNSM 177
           +HG+ +E+   D+A+  LGY KN +
Sbjct: 59  EHGE-IELKHSDDAVMSLGYFKNEL 82


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 113 KPWKSFLKTRPLQN*VMKKIQCFSTPRRKNE 205
           K WKSFL          KK++C   P+RK E
Sbjct: 5   KIWKSFLNAISKVFSKGKKLRCTCFPKRKKE 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,152
Number of Sequences: 5004
Number of extensions: 57990
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)