Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2245
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0101 - 25581800-25581943,25582030-25582095,25582268-255823...    31   1.2  
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654...    30   2.1  
06_01_0207 + 1579343-1579529,1579610-1579659,1579896-1580092,158...    28   8.4  
05_03_0225 - 10572223-10572465,10572617-10572862,10573140-105732...    28   8.4  
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083...    28   8.4  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    28   8.4  

>05_06_0101 -
           25581800-25581943,25582030-25582095,25582268-25582390,
           25582635-25582722,25582823-25582920,25583088-25583147,
           25583228-25583288,25583374-25583505,25583957-25584167,
           25584515-25584648,25584907-25584989,25585077-25585142,
           25585552-25585607,25585701-25585800,25586313-25586421,
           25586499-25586653,25586767-25586937,25587129-25587212,
           25587261-25587345,25587431-25587477,25587912-25588124
          Length = 761

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = +1

Query: 31  IIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKL--GYEKN--SMFLDSQKE 198
           I++ G P +GKT  A+++ +     +G   +IV+  E ++K     EKN   +F D++ +
Sbjct: 261 ILLYGPPGTGKTLMARQIGKLL---NGNEPKIVNGPEVLSKFVGETEKNVRDLFADAEND 317

Query: 199 KRVRG 213
           ++ RG
Sbjct: 318 QKTRG 322


>03_02_0985 -
           12961787-12961984,12963177-12963337,12965332-12965489,
           12966015-12966105,12966715-12966752,12966994-12967154,
           12967249-12968687,12968815-12969227,12969630-12970987,
           12971089-12971454,12971533-12971696,12971748-12971820,
           12972967-12973113
          Length = 1588

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 190 QKEKRVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELY 309
           +K + V G+ + +    +  DN+VIL G N++ G +Y  Y
Sbjct: 51  EKIQHVLGHFQKDFEGGVSADNLVILSGKNFLTGSKYGGY 90


>06_01_0207 +
           1579343-1579529,1579610-1579659,1579896-1580092,
           1580343-1580469,1580562-1580693
          Length = 230

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 49  PVSGKTTRAKELKQFFEEKHGKTVEIVSE--DEAIAKLGYEKNSMFLDSQKEKR 204
           PV  +     E ++  + K GK V++  +  DEA+A    +K   +LD +K+KR
Sbjct: 103 PVGDENASVDENRR--KRKRGKAVDLRFKELDEAVAVSKKQKRKKYLDEKKKKR 154


>05_03_0225 -
           10572223-10572465,10572617-10572862,10573140-10573241,
           10574234-10574413,10575076-10575156
          Length = 283

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 277 CCRLV*RHYPFLLILSLQILSNPALVFPS 191
           C  ++  HYP L+  S+ ILSNP  +F S
Sbjct: 174 CTHIIQNHYPGLI--SVAILSNPPRIFES 200


>04_04_0464 -
           25405629-25405665,25406644-25406710,25408112-25408373,
           25408989-25409198,25409818-25410006,25410087-25410548,
           25410889-25410936,25411972-25412301
          Length = 534

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 509 TVKSGLSHRLLEFGSSNLNLVNAL 438
           T+K G+SHRL E G S  + + AL
Sbjct: 165 TMKDGISHRLTEIGGSPESQIKAL 188


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
 Frame = +1

Query: 55  SGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFL--------DSQKEKRVR 210
           SG     K L++ +EE+  K  ++V +DE  A+L Y KN+  L        D    ++VR
Sbjct: 370 SGYGYHGKTLEKLYEEEQ-KLYKLV-KDEEFARLQYRKNTSLLQRLESGDHDKLHAEKVR 427

Query: 211 GYLKSEAIRLIGKDNVVILDGSNYIKGYRYELY 309
             ++    R+I  +  V L   +  K    ELY
Sbjct: 428 DNIEELQARIISLEEAVGLTCLSISKLRDEELY 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,396
Number of Sequences: 37544
Number of extensions: 319802
Number of successful extensions: 945
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)