Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2245
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical p... 103 2e-22
Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical p... 29 3.3
Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical p... 29 3.3
Z66516-1|CAA91358.3| 251|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ... 28 5.7
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 28 5.7
Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein ... 28 7.5
Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein ... 28 7.5
Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein. 28 7.5
U88180-5|AAB42299.1| 340|Caenorhabditis elegans Hypothetical pr... 28 7.5
U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned expre... 28 7.5
Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z99281-23|CAE18026.1| 302|Caenorhabditis elegans Hypothetical
protein Y57G11C.43 protein.
Length = 302
Score = 103 bits (246), Expect = 2e-22
Identities = 59/163 (36%), Positives = 97/163 (59%)
Frame = +1
Query: 22 MPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEK 201
MPLII+ G P SGK+T L + FEEK GK I+ +++ G+++ + + S KEK
Sbjct: 1 MPLIIVTGHPSSGKSTVVDRLAKKFEEK-GKDYLIIRDEDYG---GFDRKN-YEFSNKEK 55
Query: 202 RVRGYLKSEAIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQCTIYTLRNHEEAWQ 381
+R +++S+ + + K+ V+I D NYIKGYRYEL+ A+K SK+T C +
Sbjct: 56 DLRSWIRSQVQQNLTKNKVIICDALNYIKGYRYELFLAAKMSKTTYCVVECSPPVATCHW 115
Query: 382 ANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTV 510
N+++ ++Y +E+ + L +R+E P++ RW+ PLF V
Sbjct: 116 LNEQK---PEVERYPKEIIDQL-MMRYERPDTKLRWEKPLFEV 154
>Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 46 TPVSGKTTRAKELKQFF-----EEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQK-EKRV 207
T + T +++++ FF E+ + ++S D+ LGY +LD +K EK++
Sbjct: 191 TKLLSNTIQSRDVSVFFDFGPAEDSRNVSRRLLSFDQGSLGLGYSTRDYYLDEKKYEKQM 250
Query: 208 RGYLK 222
+ Y K
Sbjct: 251 KAYRK 255
>Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +1
Query: 46 TPVSGKTTRAKELKQFF-----EEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQK-EKRV 207
T + T +++++ FF E+ + ++S D+ LGY +LD +K EK++
Sbjct: 191 TKLLSNTIQSRDVSVFFDFGPAEDSRNVSRRLLSFDQGSLGLGYSTRDYYLDEKKYEKQM 250
Query: 208 RGYLK 222
+ Y K
Sbjct: 251 KAYRK 255
>Z66516-1|CAA91358.3| 251|Caenorhabditis elegans Hypothetical
protein W03C9.1 protein.
Length = 251
Score = 28.7 bits (61), Expect = 4.3
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Frame = +1
Query: 52 VSGKTTRAKELKQFFEEKHGKTVEIVSEDEAIAKLGYEKNSMFLDSQKEKRVR-GYLKSE 228
V GK +AK+L +FF HGK ++ + + L + S+ D + E + Y S+
Sbjct: 67 VDGKDKKAKKLSKFFVFNHGKDEDLKTAVGSEPTLDSTQESITEDDEHESPLSDNYKFSD 126
Query: 229 AIRLIGKDNVVILDGSNYIKGYRYELYCASKASKSTQ 339
+L G ++ Y++ R + + KS Q
Sbjct: 127 DEKLDGL-QILPSPPPKYVEKLRSRVRQTRRGKKSPQ 162
>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
protein F26A3.3 protein.
Length = 1632
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 340 CTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
C + R + A Q ++ R S + +Y V N R + P + DSP+FT+
Sbjct: 248 CPVLIRRAYRTAKQESENRHSVPHYRRYL--VINR-GRSANQYPTAKAITDSPVFTIEFD 304
Query: 520 DNIDLENIYKVL 555
++ L IY++L
Sbjct: 305 QSVGLNEIYRLL 316
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
protein T06E4.3b protein.
Length = 2514
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
LSH L +F N + N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
protein T06E4.3a protein.
Length = 2531
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
LSH L +F N + N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883
>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
polymerase relatedEGO-1 protein.
Length = 1632
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 340 CTIYTLRNHEEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVLPT 519
C + R + A Q ++ R S + +Y V N R + P + DSP+FT+
Sbjct: 248 CPVLIRRAYRTAKQESENRHSVPHYRRYL--VINR-GRSANQYPTAKAITDSPVFTIEFD 304
Query: 520 DNIDLENIYKVL 555
++ L IY++L
Sbjct: 305 QSVGLNEIYRLL 316
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 494 LSHRLLEFGSSNLNLV-NALKTSSVYWSLLS 405
LSH L +F N + N ++ S +YWSLLS
Sbjct: 853 LSHVLSDFNFPNQKITFNMIRPSLLYWSLLS 883
>Z28377-1|CAA82226.1| 264|Caenorhabditis elegans PES-1A protein
protein.
Length = 264
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 477 QQSMG*STLHSSANRQYRFRKYI*SSILKRNLHH-PIKALK---ILHYSSTNFLYQSGTK 644
QQS S + SS + KY ++++ + P K+L+ I Y S+NF Y K
Sbjct: 75 QQSGRNSPVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQK 134
Query: 645 PLQ 653
PLQ
Sbjct: 135 PLQ 137
>Z28376-1|CAA82225.1| 228|Caenorhabditis elegans PES-1B protein
protein.
Length = 228
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 477 QQSMG*STLHSSANRQYRFRKYI*SSILKRNLHH-PIKALK---ILHYSSTNFLYQSGTK 644
QQS S + SS + KY ++++ + P K+L+ I Y S+NF Y K
Sbjct: 39 QQSGRNSPVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQK 98
Query: 645 PLQ 653
PLQ
Sbjct: 99 PLQ 101
>Z28375-1|CAA82224.1| 264|Caenorhabditis elegans PES-1 protein.
Length = 264
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 477 QQSMG*STLHSSANRQYRFRKYI*SSILKRNLHH-PIKALK---ILHYSSTNFLYQSGTK 644
QQS S + SS + KY ++++ + P K+L+ I Y S+NF Y K
Sbjct: 75 QQSGRNSPVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQK 134
Query: 645 PLQ 653
PLQ
Sbjct: 135 PLQ 137
>U88180-5|AAB42299.1| 340|Caenorhabditis elegans Hypothetical
protein T27A3.6 protein.
Length = 340
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +1
Query: 19 KMPLIIICGTPVSGKTTRAKELKQFFEEKHGKTVEIVSEDE 141
K ++ + G SGK+T AKE ++FF G+T I+++DE
Sbjct: 5 KAYVLALAGCTNSGKSTLAKEFQRFFGA--GETT-IINQDE 42
>U64609-3|AAB04600.1| 264|Caenorhabditis elegans Patterned
expression site protein 1 protein.
Length = 264
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Frame = +3
Query: 477 QQSMG*STLHSSANRQYRFRKYI*SSILKRNLHH-PIKALK---ILHYSSTNFLYQSGTK 644
QQS S + SS + KY ++++ + P K+L+ I Y S+NF Y K
Sbjct: 75 QQSGRNSPVSSSTESPTKRPKYSYNALIAMAIQSSPFKSLRVSEIYKYISSNFSYYKNQK 134
Query: 645 PLQ 653
PLQ
Sbjct: 135 PLQ 137
>Z73425-4|CAA97786.1| 667|Caenorhabditis elegans Hypothetical
protein F12F6.8 protein.
Length = 667
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 367 EEAWQANQKRISTDNSDQYTEEVFNALTRLRFEEPNSNNRWDSPLFTVL 513
+ A Q +R+ T +DQ E + N R +F + S ++ D P+F VL
Sbjct: 565 DSANQLILERVPTHLTDQIREYLANYSLRTKFRKIVSLSKRDGPIFWVL 613
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,645
Number of Sequences: 27780
Number of extensions: 311635
Number of successful extensions: 1040
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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