Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2244
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    29   0.63 
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   1.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    27   3.3  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   5.8  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    25   7.7  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 258 LKICVLSASFLTFSIASKLTQI 193
           L  C++S SFLTF++ +KLT +
Sbjct: 490 LGTCIVSVSFLTFTVYAKLTNL 511


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 454  FDSNFGGQILNKMAYVKAFLIVWRVEVQDKLINCPSVNSELLLE 585
            F  NF G  + ++A+ +A L   R+ + D+  +     S LLLE
Sbjct: 1232 FSKNFSGGQIQRLAFARALLRNPRLLILDECTSALDSKSSLLLE 1275


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 16/59 (27%), Positives = 31/59 (52%)
 Frame = +1

Query: 421 LQNSKKKTFDNFDSNFGGQILNKMAYVKAFLIVWRVEVQDKLINCPSVNSELLLEDSPK 597
           LQ+S +K  D+  S+    +LN+ +   ++  +     ++ ++    V +E LLE SPK
Sbjct: 606 LQSSGRKWLDSLSSSLPSSLLNRGSSTHSWEKLTNASTEEVMLPLDMVVNE-LLEKSPK 663


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 237 ASFLTFSIASKLTQICMELEQ 175
           A+ +TFSIASK+   C +L+Q
Sbjct: 269 ATPITFSIASKILSCCKKLKQ 289


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 305 YS*NDCINA*PPNALKQDQYPSQYQSLEPVLCPVFIDP 418
           Y+ N    A PP  ++ + Y + YQ   P   P ++ P
Sbjct: 104 YNWNQAQTAQPPQPVQPNPYGAPYQQAPPAGAPYYMYP 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,020
Number of Sequences: 5004
Number of extensions: 47952
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)