Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2244
         (685 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.                   32   2.2  
U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.                   32   2.2  
BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma recept...    32   2.2  
AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma recept...    32   2.2  

>U05877-1|AAA16956.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 581 NNNSLFTDGQFINLSCTSTLHTIKKALTYAILFSI*PPKLLSKLSNVFFF 432
           N +++F  G   N+SC  T+      L   IL S+    LLS L+   FF
Sbjct: 219 NKSNIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFF 268


>U05875-1|AAA16955.1|  337|Homo sapiens AF-1 protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 581 NNNSLFTDGQFINLSCTSTLHTIKKALTYAILFSI*PPKLLSKLSNVFFF 432
           N +++F  G   N+SC  T+      L   IL S+    LLS L+   FF
Sbjct: 219 NKSNIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFF 268


>BC003624-1|AAH03624.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 581 NNNSLFTDGQFINLSCTSTLHTIKKALTYAILFSI*PPKLLSKLSNVFFF 432
           N +++F  G   N+SC  T+      L   IL S+    LLS L+   FF
Sbjct: 219 NKSNIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFF 268


>AY644470-1|AAT45458.1|  337|Homo sapiens interferon gamma receptor
           2 (interferon gamma transducer 1) protein.
          Length = 337

 Score = 31.9 bits (69), Expect = 2.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 581 NNNSLFTDGQFINLSCTSTLHTIKKALTYAILFSI*PPKLLSKLSNVFFF 432
           N +++F  G   N+SC  T+      L   IL S+    LLS L+   FF
Sbjct: 219 NKSNIFRVGHLSNISCYETMADASTELQQVILISVGTFSLLSVLAGACFF 268


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,864,649
Number of Sequences: 237096
Number of extensions: 1508206
Number of successful extensions: 3726
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3726
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)