Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2242
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 33 0.26
05_05_0313 - 24026142-24026708 31 1.0
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 31 1.0
12_02_1211 - 27033927-27034029,27034130-27034273,27034358-270344... 29 3.2
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 29 3.2
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 29 3.2
04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204 29 3.2
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 4.2
02_03_0099 + 15206282-15206917 29 4.2
03_05_1074 + 30168065-30168577 29 5.6
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008... 28 7.4
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 33.1 bits (72), Expect = 0.26
Identities = 21/55 (38%), Positives = 25/55 (45%)
Frame = -2
Query: 408 CGAAGTAPDFLPIEQDSGLVGRVAGPHVPVDGDVSGVLLGHELVVSCGRLVDFDD 244
CG+A T P+E+D G V RV VD +G L G GR D DD
Sbjct: 64 CGSAATPTPATPVEEDKGSVRRVPEKQSKVDSSSNGALGG-----GGGRRDDVDD 113
>05_05_0313 - 24026142-24026708
Length = 188
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 481 SSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKSGG 603
+S EG +V + G H P Y G P +TSG GG
Sbjct: 61 TSEEGFRALVQELTGRHADPSKYRGGGGGAPVDETSGGGGG 101
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 324 PVDGDVSGVLLGHELVVSCGRLVDFDDRERALAPAEVRFP 205
P D D+S ++G + ++S L +D E APAE + P
Sbjct: 312 PQDNDLSSYMVGDKSILSDAGLKSIEDVEALPAPAETKMP 351
>12_02_1211 -
27033927-27034029,27034130-27034273,27034358-27034439,
27034536-27034690,27034865-27034945,27035397-27035458,
27035966-27036034,27036807-27036867,27037560-27037816
Length = 337
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 335 PATRPTSPESCSMGRKSGAVPAAPHQPLSK*RRVEDTRCRSSSATQTDAA 484
PA+ +S S S + ++P P S RR+ RC SSS++ +A
Sbjct: 25 PASSSSSSSSSSTTTAAASLPLRAAVPPSSGRRIPPLRCASSSSSSQGSA 74
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 335 PATRPTSPESCSMGRKSGAVPAAPHQPLSK 424
P T+PT+P S + S P P QP+ +
Sbjct: 167 PTTQPTTPTSTPLPAPSAMAPGQPQQPIQQ 196
>05_05_0254 -
23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/77 (32%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Frame = -2
Query: 396 GTAPDFLPIEQDSGLVGRVAGPHVPVD-GDVSGVLLGHE--LVVSCGRLVDFDDRERALA 226
G P + D+ G +G + D L G E LV DF D E +A
Sbjct: 737 GVLPAMVANGDDASNAGSASGLEDLIHYDDAFYFLTGEEGLLVFRVSEFHDFKDEELDIA 796
Query: 225 PAEV-RFPWRAAGADGE 178
P E+ RFP R G GE
Sbjct: 797 PIEIRRFPRRGRGHYGE 813
>04_04_0258 + 23988409-23989580,23990450-23990851,23991138-23991204
Length = 546
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 267 GRLVDFDDRERALAPAEVRFPWRAAGADGERGHRENERYHPMP 139
GR D DD R P R+P +G G G RE+ + P
Sbjct: 191 GRSDDIDDWSRDKKPMPSRYPSLGSGGGGGGGFRESPGFRDSP 233
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Frame = +1
Query: 376 KEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSE----GVEIVVADTDGSHLRPL 543
+E+WSGA SA K KK + ++ DG S VEIV+ + L +
Sbjct: 620 RELWSGATLINSAVKKTKKKSKRISDIDSTGLDGLHSESFMQPAVEIVL--NQETELASV 677
Query: 544 DYSIGEKN 567
+ S E N
Sbjct: 678 ELSFAENN 685
>02_03_0099 + 15206282-15206917
Length = 211
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 355 SRVLLDGKEVWSGAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 522
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>03_05_1074 + 30168065-30168577
Length = 170
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = +1
Query: 304 ADVSVNWNVWTGDAADKSRVLLDGKEVWSGAGSATSAAFKVKKGGRYQMQVELCNSDGCS 483
A +VN +G+A VL DG G+ S A K GG LC++DG
Sbjct: 11 AVAAVNGRSASGEATAARVVLADGALRRFPGGTRASQAVKAAGGGGGGSSWFLCSADGLE 70
Query: 484 SSEGVEIVVADTDGSHLRP 540
V V D L+P
Sbjct: 71 LGAAV-AAVGGGDDEELQP 88
>07_03_1486 +
26899479-26899549,26899861-26899989,26900649-26900834,
26901025-26901247,26901662-26901666,26901796-26901924,
26902697-26902894,26903138-26903356,26903461-26903699,
26903797-26903888,26904009-26904224,26904327-26904554,
26904631-26904722,26904806-26904899,26905475-26905567,
26905667-26906640,26906727-26906841,26907135-26908895
Length = 1687
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -2
Query: 390 APDFLPIEQDSGLVGRVAG-PHVP 322
A DF+P +QD GLVG G P VP
Sbjct: 925 ADDFIPEDQDGGLVGFPRGQPDVP 948
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,827,822
Number of Sequences: 37544
Number of extensions: 479436
Number of successful extensions: 1482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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