Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2242
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr...    35   0.058
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical...    29   5.0  
Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z75531-8|CAA99801.1|  188|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   8.8  
AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical ...    28   8.8  

>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
           protein C03D6.4 protein.
          Length = 1390

 Score = 35.1 bits (77), Expect = 0.058
 Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 536 LKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPSSRTL 357
           LK L   S   IS P  +  P   + ST     P   TLK++ V  P+ +QT  PSS   
Sbjct: 427 LKKLQFDSQKPISAPPSDQTPVT-KPSTVFGQKPEAETLKSSLVGSPSSVQTPKPSSSLF 485

Query: 356 D-LSAASPVHTFQLTETSAAS 297
           +  S AS + T QLTE+  ++
Sbjct: 486 NPKSIASNIETSQLTESKPST 506


>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
            protein Y67D8C.9 protein.
          Length = 1073

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
 Frame = -3

Query: 545  SRGLKWLPSVSATTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQ-TSFPS 369
            S   K L   +   +ST +  ++ S LQS   + Y P F     A++A  +  + T+  S
Sbjct: 944  SHDQKLLRRTARAIVSTKNAVVYASALQSDFSLHYNPTFRKYLWAEIAKMSTFEKTALFS 1003

Query: 368  SRTLDLSAASPV--HTFQ-LTETSAASFLVTSW 279
            + + D+  AS +  H+ + + E      L+T+W
Sbjct: 1004 TNSTDILPASRILLHSVKTIDELQQIRGLLTNW 1036


>Z81460-1|CAB03830.2|  215|Caenorhabditis elegans Hypothetical
           protein C04A11.1 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +1

Query: 571 PFKQTSGKSGGRLLR 615
           P+K  SGKSGGR+LR
Sbjct: 135 PYKPRSGKSGGRVLR 149


>Z75531-8|CAA99801.1|  188|Caenorhabditis elegans Hypothetical
           protein C54D10.9 protein.
          Length = 188

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 773 VCKCLKNCPSISFKTVIDAITTTNRNEAVE*MSQVR 666
           +C  L NCP+I  ++VI     T + +AV  M  +R
Sbjct: 17  ICYGLNNCPTIPIRSVIQRAAETTK-DAVTQMQMIR 51


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 509 TTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPS 369
           TT++TP++ +  + + SS  +   PP     AA     AP+ T+ P+
Sbjct: 573 TTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPT 619


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 509 TTISTPSLELHPSELQSSTCIWYLPPFFTLKAADVALPAPLQTSFPS 369
           TT++TP++ +  + + SS  +   PP     AA     AP+ T+ P+
Sbjct: 629 TTLTTPTVPVTTTVVPSSATVPTTPPTTVTVAATTTSKAPVVTTSPT 675


>AC006655-5|AAF39873.1|  172|Caenorhabditis elegans Hypothetical
           protein H10D18.1 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 247 VEVNQAATAYNQLVTKKDAADVSVNWNVW 333
           +E+++   AY Q+++ K  +D ++ WN++
Sbjct: 3   LEISEKIKAYRQVMSAKSPSDAALTWNLF 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,237,735
Number of Sequences: 27780
Number of extensions: 358922
Number of successful extensions: 1069
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)