Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2240
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   3.5  
SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   4.7  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   4.7  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   6.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.2  

>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -3

Query: 537 RSTTSIQTSHATELMKRQRGEVNRLSAEAISPITLPLGTPDWRSSAPRPP 388
           R+T  I+  HA +   +++   + +    + P++ P  +PD   S+P PP
Sbjct: 235 RATPDIKEQHAKK--PKRKHTRSTVPTSNVEPVSQPQPSPDKIVSSPNPP 282


>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = +1

Query: 34  ISVFSMCTCAFICFPVVYLIV------HETFVGFSNANLTGF 141
           IS F++ +    CFP++YLI+        +F+G ++  + G+
Sbjct: 146 ISFFNLFSIPAYCFPIIYLIMTTILVPKASFIGHASGAVMGY 187


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 534 STTSIQTSHATELMKRQRGEVNRLSAEAISPITLP--LGTPDWRSS 403
           S +S Q SH  + + +     NR+ +++  PI  P  L   D+RSS
Sbjct: 330 SYSSYQHSHVHDFIHKNNTHSNRVLSQSSGPIVRPSLLAALDFRSS 375


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 668 ASTLLHRTSYLLGHDDVNDIFYYLS*DTLYSNV 570
           +S + + +   L HDD  DI+Y L     YSN+
Sbjct: 362 SSDIRNHSCPTLYHDDAEDIYYDLHHTESYSNI 394


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = -3

Query: 528 TSIQTSHATELMKRQRGEVNRLSAEAISPITLPLGTPDWRSSAP--RPPVLSVGKFCEMV 355
           TS  TS +      Q+    +LSA A         T   R++    +PPV  V     + 
Sbjct: 464 TSNPTSASVTSQNGQQPINTKLSANAAKTNYQSYLTNKARNATQPTQPPVSQVDYSNNLP 523

Query: 354 HLLKSSIAFHDSSSPSIDATTLGNEK-SFPIFATR 253
             L +S  F  S+SP    T  GNE  S P+   R
Sbjct: 524 PNLDTSSTFRSSASPPSAFTKAGNEALSVPLSGAR 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,005,509
Number of Sequences: 5004
Number of extensions: 62014
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)