Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2240
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0249 - 14770259-14770344,14770434-14770514,14770606-147710... 31 1.2
11_06_0444 + 23633129-23633183,23633409-23633446,23633967-236340... 30 1.6
11_02_0036 + 7599646-7599950,7600106-7600145,7600403-7600437,760... 30 1.6
06_03_0969 - 26413534-26413594,26415020-26415318 30 1.6
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 30 1.6
03_01_0409 - 3158939-3159040,3159301-3159464,3159950-3160044,316... 30 1.6
07_03_0704 + 20831071-20832381 30 2.1
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 29 2.8
11_05_0015 + 18403367-18403729,18404500-18404565,18405121-184052... 29 4.9
10_08_0052 - 14491990-14493108 29 4.9
11_04_0397 - 17230152-17231453 28 6.4
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213... 28 6.4
01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008 28 6.4
12_02_0295 + 17006064-17007063,17007068-17007666 28 8.5
12_01_0740 + 6646471-6649407 28 8.5
10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152 28 8.5
06_01_0245 - 1849156-1849197,1849300-1849341,1849564-1849605,184... 28 8.5
>08_02_0249 -
14770259-14770344,14770434-14770514,14770606-14771006,
14771358-14771392,14771913-14771950,14772176-14772230
Length = 231
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 VTEHRCHNTRQRKVVSYFCDEDTAS 242
V EH CH + ++VS FCD T S
Sbjct: 92 VAEHVCHPEKMERLVSSFCDAQTYS 116
>11_06_0444 +
23633129-23633183,23633409-23633446,23633967-23634001,
23634353-23634753,23634845-23634925,23635015-23635100
Length = 231
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 VTEHRCHNTRQRKVVSYFCDEDTAS 242
V EH CH + ++VS FCD T S
Sbjct: 92 VAEHVCHPEKMERLVSSFCDVQTYS 116
>11_02_0036 +
7599646-7599950,7600106-7600145,7600403-7600437,
7600789-7601189,7601281-7601361,7601451-7601536
Length = 315
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 316 VTEHRCHNTRQRKVVSYFCDEDTAS 242
V EH CH + ++VS FCD T S
Sbjct: 176 VPEHVCHPEKMERLVSSFCDAQTHS 200
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 537 RSTTSIQTSHATELMKRQRG-EVNRLSAEAISPITLPLGTPDWRSSAPRPPVLSVGKFC 364
RS + Q S A +R RG + R A A P + G ++ A RPP ++ G FC
Sbjct: 48 RSRAAAQGSPAAAARRRSRGTQARRPPAAARRPPAMARGP---QAQARRPPAMAQGSFC 103
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 451 HLSHHPPPRDAGLAVVGATTTSPL 380
H HHPPP L ++ A+TT+PL
Sbjct: 235 HHHHHPPPPPPELQLLPASTTAPL 258
>03_01_0409 -
3158939-3159040,3159301-3159464,3159950-3160044,
3160731-3161206
Length = 278
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 341 DLSKCTISQNLPTERTGGRGADDRQSGV-PRGRVMGEMASAL 463
+ S C+ S +L + +GG G +D GV G V+ E ASAL
Sbjct: 22 ETSPCSSSSSLRCKNSGGVGGEDDDDGVGGGGAVVAENASAL 63
>07_03_0704 + 20831071-20832381
Length = 436
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = -3
Query: 450 ISPITLPLGTPDWRSSAPRPPVLSVGKFCEMVHLLKSSIAFHDSSSPSIDATTLGNEKSF 271
+ PITL +R++ R LS GK+ E V IAF ++ + ATT + SF
Sbjct: 16 LPPITLAGDLHGFRATLTRIHELSPGKYSEAVRRDSHRIAFLSDATAAGKATTTNSSVSF 75
>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
Length = 422
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = -3
Query: 516 TSHATELMKRQRGEV-NRLSAEAISPITLPLGTPDWRSSAPRPPVLSVGKFCEMVHLLKS 340
T+ A RG V +R+ + SP+ P + + S RP F L +
Sbjct: 191 TARAEASTPPSRGRVRSRIQFKPASPLGRPSVSANRVSPRNRPWAKKTVMFPNPAFLAST 250
Query: 339 SIAFHDSSSPSIDATTLGNEKSFPIFATRTRH 244
S A +DS SPS +S PI A +T H
Sbjct: 251 SSAAYDSPSPSKKQKRFYKTRS-PIIARQTPH 281
>11_05_0015 +
18403367-18403729,18404500-18404565,18405121-18405234,
18406109-18406297,18406335-18406667,18406708-18406743,
18407806-18407919,18408506-18408999,18409293-18409716
Length = 710
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 601 IYHKIHYIVMLKGIVDL*NLLSLNNQHPNLACDRTHEKAKGGSEPFKCGSHLS 443
++H+ YI L + L S++ P+L CD+ H A+ GS +S
Sbjct: 230 VHHQTSYIPFLTAL-----LCSMSPTAPSLVCDKPHSAAENDENGCSSGSSMS 277
>10_08_0052 - 14491990-14493108
Length = 372
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 457 GSHLSHHPPPRDAGLAVVGATTTSPLGRQILRDGALA*VEHRLP 326
GS L PPP + A+VG T T G IL+ + + +LP
Sbjct: 9 GSELLRPPPPYSSASAIVGGTVT---GHHILQIDGYSYTKEKLP 49
>11_04_0397 - 17230152-17231453
Length = 433
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = -2
Query: 460 CGSHLSHHPPPRDAGLAVVGAT 395
C H +H P PR G A GAT
Sbjct: 51 CSLHWAHRPLPRGVGTAAFGAT 72
>05_07_0076 -
27520152-27520379,27520785-27521096,27521194-27521333,
27521893-27521956,27522071-27522277,27522350-27522493,
27522578-27522709,27522880-27524294,27524647-27524920,
27526096-27526129,27527028-27527059
Length = 993
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 293 VVASMLGDDESWKAMLDLSKCTISQNLPTERTG 391
V S LGD + W L K T+ N +RTG
Sbjct: 440 VPVSTLGDHDFWPGQFILEKLTVEDNGRCQRTG 472
>01_06_1554 + 38217297-38217539,38217783-38218352,38218439-38219008
Length = 460
Score = 28.3 bits (60), Expect = 6.4
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 249 VSSSQK*ETTFRCRVLWHRCSVTTSRGRRCST*ASAPSRRICRPRGLVVVAPTTASPASR 428
+ +S + +T +R V H V T R C APSRR CR V+ A TA+ R
Sbjct: 64 METSHEPQTPWRLAV--HPAVVGTVRVSGCGA-VVAPSRRQCRVSAAVLTAAETATATRR 120
>12_02_0295 + 17006064-17007063,17007068-17007666
Length = 532
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 319 RVVEGDARLKQVHHLAEFADRED 387
+VV GD ++ H AEFAD+ D
Sbjct: 318 KVVNGDDEIRDKHIYAEFADKND 340
>12_01_0740 + 6646471-6649407
Length = 978
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 377 SANSARWCTCLSRASP 330
S+N ARWC ++R+SP
Sbjct: 189 SSNGARWCDAIARSSP 204
>10_08_0053 - 14496494-14497240,14497418-14497501,14497676-14498152
Length = 435
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = -2
Query: 457 GSHLSHHPPPRDAGLAVVGATTTSPLGRQILRDGALA*VEHRLP 326
GS L PPP + A+VG T T G IL+ + + +LP
Sbjct: 9 GSELVWPPPPYSSASAIVGGTVT---GHHILQIDGYSYTKEKLP 49
>06_01_0245 -
1849156-1849197,1849300-1849341,1849564-1849605,
1849697-1849824,1850078-1850285,1850381-1850561,
1851761-1852114,1852577-1852803
Length = 407
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 444 PITLPLGTPDWRSSAPRPPVLSVGKFCEMVHLLKSSIAFHDSSSP-SIDATTLGNEKS 274
P++ P+ + P VLS+GK + LK SI SSSP ++ T+ + S
Sbjct: 72 PLSSQCSYPESAHALQEPDVLSLGKLLDAT-TLKESITCSPSSSPQAVSKDTINSSPS 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,869,673
Number of Sequences: 37544
Number of extensions: 458696
Number of successful extensions: 1538
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1538
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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