Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2240
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    27   0.77 
AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical prot...    24   4.1  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    23   9.5  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    23   9.5  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 26.6 bits (56), Expect = 0.77
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 389 GGRGADDRQSGVPRGRVMGE-MASALKRFTSPL 484
           G  G  DRQ G  +GR  GE +A+ LK+  S L
Sbjct: 497 GEHGLSDRQFGFRKGRSTGEAIAAVLKKRRSAL 529


>AJ439060-18|CAD27769.1|  257|Anopheles gambiae hypothetical protein
           protein.
          Length = 257

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 296 VASMLGDDESWKAMLDLSKCTISQNLPTERTGGR 397
           V   + + E  K  +  ++C++  N P+E T GR
Sbjct: 90  VCYYVSESEMEKIEMLFARCSVGNNSPSEETIGR 123


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 531 TTSIQTSHATELMKRQRGEVNRLSAEAISPITLPLGTPDWR 409
           T   + S AT +   +   V  +  EA S I   +GTPDWR
Sbjct: 210 TNMAENSTATAVSSAELYFVKDVLKEA-STIHDGIGTPDWR 249


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 531 TTSIQTSHATELMKRQRGEVNRLSAEAISPITLPLGTPDWR 409
           T   + S AT +   +   V  +  EA S I   +GTPDWR
Sbjct: 210 TNMAENSTATAVSSAELYFVKDVLKEA-STIHDGIGTPDWR 249


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,170
Number of Sequences: 2352
Number of extensions: 15688
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)