Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2240
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-P...    30   3.6  
AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p pro...    29   6.3  
BT024930-1|ABE01160.1| 1211|Drosophila melanogaster RE42507p pro...    29   8.4  
AJ010642-1|CAA09299.2| 1147|Drosophila melanogaster Dof protein ...    29   8.4  
AE014297-1870|AAF55076.2| 1146|Drosophila melanogaster CG31317-P...    29   8.4  

>AE014298-1891|AAF48260.1|  787|Drosophila melanogaster CG10617-PA
           protein.
          Length = 787

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -3

Query: 540 CRSTTSIQTSHATELMKRQRGEVNR--LSAEAISPITLPLGTPDWRSSAPRPPVL--SVG 373
           C ST  I ++  +E +      + +  +S    +PIT PL TP+   S   P  +  +  
Sbjct: 275 CESTEQIPSNPISEPLNATVASLEKTTISTSECTPITAPLETPNGPISTDTPSTIHHNGN 334

Query: 372 KFCEMVHLLKSSIAFHDSSSP 310
            F E   L    +  H++++P
Sbjct: 335 PFVERESLSSRLLKIHNTTNP 355


>AY129451-1|AAM76193.1|  787|Drosophila melanogaster RE01517p
           protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
 Frame = -3

Query: 540 CRSTTSIQTSHATELMKRQRGEVNR--LSAEAISPITLPLGTPDWRSSAPRPPVL--SVG 373
           C ST  I ++  +E +      + +  +S    +PIT PL TP+   S   P  +  +  
Sbjct: 275 CESTEQIPSNPISEPLNATVASLEKTTISTSECTPITAPLETPNGPISTDTPSTIHHNGN 334

Query: 372 KFCEMVHLLKSSIAFHDSSSP 310
            F E   L    +  H++++P
Sbjct: 335 PFVERESLSSRLLKTHNTTNP 355


>BT024930-1|ABE01160.1| 1211|Drosophila melanogaster RE42507p
           protein.
          Length = 1211

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 429 LGTPDWRSS--APRPPVLSVGKFCEMVHLLKSSIAFHDSSSPSIDATTLGN 283
           LG+PD   S  APRPP+LS  KF    H  + +    +++S S  +  LG+
Sbjct: 184 LGSPDEVPSMMAPRPPLLSPNKFRGSSHRRRDNCGNVNNTSGSSASGFLGS 234


>AJ010642-1|CAA09299.2| 1147|Drosophila melanogaster Dof protein
           protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 429 LGTPDWRSS--APRPPVLSVGKFCEMVHLLKSSIAFHDSSSPSIDATTLGN 283
           LG+PD   S  APRPP+LS  KF    H  + +    +++S S  +  LG+
Sbjct: 120 LGSPDEVPSMMAPRPPLLSPNKFRGSSHRRRDNCGNVNNTSGSSASGFLGS 170


>AE014297-1870|AAF55076.2| 1146|Drosophila melanogaster CG31317-PA,
           isoform A protein.
          Length = 1146

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -3

Query: 429 LGTPDWRSS--APRPPVLSVGKFCEMVHLLKSSIAFHDSSSPSIDATTLGN 283
           LG+PD   S  APRPP+LS  KF    H  + +    +++S S  +  LG+
Sbjct: 119 LGSPDEVPSMMAPRPPLLSPNKFRGSSHRRRDNCGNVNNTSGSSASGFLGS 169


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,260,859
Number of Sequences: 53049
Number of extensions: 741783
Number of successful extensions: 2422
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2422
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)