Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2240
         (716 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -2

Query: 694 LQDSNTGASLQHYCTGRLIF--*ATTTSMTFSIIYHKIHYIVMLKGIVDL*NLLSLNNQ 524
           L+ +NT   L  +C+G LIF    T T+ + S ++   +++ ++  ++ L ++LSL+ Q
Sbjct: 407 LKSNNTFTLLSGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQ 465


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
 Frame = -2

Query: 694 LQDSNTGASLQHYCTGRLIF--*ATTTSMTFSIIYHKIHYIVMLKGIVDL*NLLSLNNQ 524
           L+ +NT   L  +C+G LIF    T T+ + S ++   +++ ++  ++ L ++LSL+ Q
Sbjct: 410 LKSNNTFTLLSGHCSGHLIFPLLLTLTNSSNSRLFIAFNFVAIVILVIILVSILSLHAQ 468


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 414 WRSSAPRPPVLSVGKFCEMVHLLKSSIAFHDSSSPSIDATTL 289
           W+SS  R   + +  F E V  LKSS   H +S+ S  A ++
Sbjct: 263 WKSSEYRDAFIDMWSFLECVKNLKSSKVLHKASNVSSAALSV 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,166,422
Number of Sequences: 27780
Number of extensions: 363533
Number of successful extensions: 1126
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)