Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2239
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 264 8e-72
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 263 1e-71
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 209 2e-55
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 157 2e-39
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 135 5e-33
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 33 0.050
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.066
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.087
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 31 0.12
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 31 0.15
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.35
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.61
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 28 1.4
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.9
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 27 1.9
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.9
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 2.5
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 27 2.5
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 27 2.5
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.5
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 3.3
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 3.3
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.3
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 4.3
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.3
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 4.3
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.3
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 26 4.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.3
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.3
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 26 4.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 4.3
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.3
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 4.3
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 26 5.7
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 5.7
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 5.7
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 5.7
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 7.6
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 7.6
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 7.6
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 25 7.6
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 7.6
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 10.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 10.0
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 25 10.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 10.0
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 25 10.0
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 10.0
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 264 bits (647), Expect = 8e-72
Identities = 129/202 (63%), Positives = 151/202 (74%)
Frame = +2
Query: 35 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGV 214
+L GD SE+ QD GIETAGGVMT LIKRN YSDNQPGV
Sbjct: 377 VLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGV 436
Query: 215 LIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKE 394
LIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K
Sbjct: 437 LIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKT 496
Query: 395 NKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL 574
KITITNDKGRLSKEEI+RMV EAEKY+ ED+ + IQAKN LESY +S++++++D L
Sbjct: 497 QKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNL 556
Query: 575 KEKISDSDKQTILDKCNDTIKW 640
K+K+ SDK+T+ +TI+W
Sbjct: 557 KDKVDASDKETVDKAVKETIEW 578
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 263 bits (645), Expect = 1e-71
Identities = 130/208 (62%), Positives = 152/208 (73%)
Frame = +2
Query: 35 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGV 214
IL GD SE+ QD GIETAGGVMT LIKRN Y+DNQPGV
Sbjct: 377 ILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGV 436
Query: 215 LIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKE 394
LIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K
Sbjct: 437 LIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGKT 496
Query: 395 NKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL 574
KITITNDKGRLSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +S++++++D L
Sbjct: 497 QKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNL 556
Query: 575 KEKISDSDKQTILDKCNDTIKWAGFQPT 658
K+K+ SDK+ I +TI+W T
Sbjct: 557 KDKVDASDKEAIDKAVKETIEWLDHNTT 584
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 209 bits (511), Expect = 2e-55
Identities = 104/181 (57%), Positives = 127/181 (70%), Gaps = 2/181 (1%)
Frame = +2
Query: 104 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFEL 283
GIET GGVMT LI RN DNQ VLIQV+EGER +TKDNNLLGKF+L
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDL 488
Query: 284 TGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TNKENKITITNDKGRLSKEEIERMVN 460
GIPPAPRGVPQIEVTF++DANG+L VSA++KS K K+ I NDKGRLS+E+IERMV
Sbjct: 489 RGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVK 548
Query: 461 EAEKYRNEDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDKCNDTIK 637
EAE++ ED KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD D +
Sbjct: 549 EAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAE 608
Query: 638 W 640
W
Sbjct: 609 W 609
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 157 bits (380), Expect = 2e-39
Identities = 84/195 (43%), Positives = 114/195 (58%)
Frame = +2
Query: 44 GDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQ 223
G S V+D GIET GGV T LI RN +D Q V I+
Sbjct: 423 GVLSGHVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIR 482
Query: 224 VFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKI 403
VF+GER + +DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+TNK++ I
Sbjct: 483 VFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKATNKDSSI 542
Query: 404 TITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEK 583
T+ G L+ EIE MV +AEKYR D +KE I+ N ES C ++S ++ K+K
Sbjct: 543 TVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNLDIH--KDK 599
Query: 584 ISDSDKQTILDKCND 628
+ + + K D
Sbjct: 600 LDQQAVEDLRSKITD 614
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 135 bits (327), Expect = 5e-33
Identities = 66/186 (35%), Positives = 103/186 (55%)
Frame = +2
Query: 53 SEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFE 232
S++ QD G+ G V + RN +DNQ V V++
Sbjct: 388 SDKTQDLLLLDVVPLSLGVAMEGNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQ 447
Query: 233 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKITIT 412
GER +N LG+F+LTGIPP PRG ++E TF++DANGIL V+A+EK+T + I IT
Sbjct: 448 GERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEIT 507
Query: 413 NDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISD 592
N G LS +I+ M+ A+K++ +D + ++AK+ LESY ++++T+ + + K+
Sbjct: 508 NSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKLKR 567
Query: 593 SDKQTI 610
DK I
Sbjct: 568 GDKSKI 573
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 32.7 bits (71), Expect = 0.050
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 377 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 553
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 554 TMED 565
++D
Sbjct: 593 KLDD 596
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.066
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = +2
Query: 437 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 616
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + S KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 617 K 619
K
Sbjct: 79 K 79
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.087
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 13/122 (10%)
Frame = +2
Query: 311 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEK------ 472
+ ++ +F + N + +I K+ N+E +K R+ E+ ++++ +K
Sbjct: 1213 IDKVRNSFFKNLNSFYEMYSIAKAENEER---FEKEKRRIMSEDRDKLIRGRQKTSIVAK 1269
Query: 473 YRN-------EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDT 631
YRN DDKQ + KN+LE+ M+ + E K D ++ LDK D
Sbjct: 1270 YRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIEG-DAKTGDDNEMEDLDKMEDL 1328
Query: 632 IK 637
K
Sbjct: 1329 EK 1330
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.5 bits (68), Expect = 0.12
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 341 DANGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 514
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 515 KNA 523
+A
Sbjct: 118 LDA 120
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 31.1 bits (67), Expect = 0.15
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = +2
Query: 386 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMED 565
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F ++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKFK-----KN 579
Query: 566 EKLKEKISD 592
KLK+K S+
Sbjct: 580 RKLKKKASN 588
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.35
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +2
Query: 431 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSD 598
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE ++ D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFD 1660
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.61
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 419 KGRLSKEEIERMVNEAEKYRNEDD 490
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.9 bits (59), Expect = 1.4
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Frame = +2
Query: 365 SAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFS 544
S+I+K K T+ + + E+ + E EK + +A+ A
Sbjct: 206 SSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQ 265
Query: 545 MKSTMEDEKLKEKISDSDKQ--TILDK 619
+ +E EK KEK D D++ T+ DK
Sbjct: 266 NSAKLEKEKAKEKQKDKDQEQDTVSDK 292
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 356 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 487
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/76 (21%), Positives = 34/76 (44%)
Frame = +2
Query: 434 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 613
+EE E+ + E K R + DK++E + + LE + + + K+ + + +
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTKEGS 753
Query: 614 DKCNDTIKWAGFQPTG 661
D C + + F+ G
Sbjct: 754 DGCTTSSQLGLFEKKG 769
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 515 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWAGFQPTGRQGGS 676
K E YC S+ ST + + K +SD T+L T+ W F+ R+ +
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLWPQFKRKYRKSST 335
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 349 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGRDRAY 453
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 347 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAE---KYRNEDDKQKETIQAK 517
N I++ A + +NKI + + EE++ ++N+ K N + Q T
Sbjct: 107 NEIVDWKANNSNEKAQNKIATNKESTDILPEEVQLVLNDLNDDVKSANSANLQPITTNVV 166
Query: 518 NALESYCFSMKSTMEDEKLKE 580
N ++Y + E +K+
Sbjct: 167 NEKDAYRKDIDELPEPSNMKD 187
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.5
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -2
Query: 366 ETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 229
E L PLA MS TSI G G GG P + + + + +SPS
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 27.1 bits (57), Expect = 2.5
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 347 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNA 523
+GIL+ + IEK +K K+ + N+ SK+ + + + +E DK KN
Sbjct: 154 DGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNG 213
Query: 524 LESYCFSMKSTMEDE-KLKEKISDSDK 601
++ S ED ++E + + K
Sbjct: 214 VDMIFASFIRRAEDVIHIREVLGEEGK 240
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 2.5
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 401 ITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKE 580
I +T + R S E V + E ++D + +++NA + S + + +KE
Sbjct: 240 IRLTRSRARSSNEA--SYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKE 297
Query: 581 KISDSDKQTILDKCNDTIK 637
K S +K DK + K
Sbjct: 298 KQSKIEKYMKSDKSSKNFK 316
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 452 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 556
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 3.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 362 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 523
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/95 (25%), Positives = 35/95 (36%)
Frame = -1
Query: 295 WDPGQLEFTEQVVIFGHSTLTLKYLDEYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSS 116
WD G+ ++ I GHS +L L+ +G V+ S+ H
Sbjct: 61 WDNGKFSLVDRFTIDGHSPTSLCVLE--NGSVLTANYNSASISRSKAKDEKPHVWHHEGK 118
Query: 115 SLNTEGKGCYIKQQQILHLLRLVTVQDSSLDSCTI 11
SL+ E + Q H LV D LD +I
Sbjct: 119 SLHPERQTSSHPHQVTAH-KHLVCSVDLGLDRFSI 152
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 392 ENKITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME 562
++++TIT++ S E++E++ N AEK + E + K + ++ LES S + +E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLE 341
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +2
Query: 347 NGILNVSAIEK-STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 523
NG + S K ST+ + + DK + E+I + ++Y NED+ + +++ A
Sbjct: 375 NGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYLQEYSNEDEIVLQVLESFPA 434
Query: 524 LESYCFSMKSTMEDEKLKEKISDSD 598
S+ ++ +T++ + KI +S+
Sbjct: 435 AVSFS-TITNTIQAKYSNRKIKNSN 458
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = +2
Query: 434 KEEIERMVNEAEKYRNEDD---------KQKETIQAKNALESYCFSMKSTMEDEKLKEKI 586
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 587 SDSDKQTILDKCND 628
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 374 EKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 553
EK +KE K ++ + E V ++ NE+D+Q E IQ Y +++S
Sbjct: 36 EKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQ-EAIQ-------YYINVES 87
Query: 554 TMEDEKLKEKISDSDK 601
DE L ++ DS +
Sbjct: 88 QDADETLHQEAQDSSE 103
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 437 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQT 607
+EIE M + + + D + + N + CFS +ED K KE +SD K +
Sbjct: 215 KEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDEMKSS 268
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 4.3
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +2
Query: 356 LNVS--AIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 529
+NVS +EK T + +I + + + + M+++ +K R+ DDK E IQA +
Sbjct: 288 INVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQ-DKIRSIDDKLTELIQAITYSQ 346
Query: 530 SYCFSMKSTMED--EKLKEKISDS--DKQTILDKCN 625
S MK E E + E I D + +LD N
Sbjct: 347 SKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTN 382
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +2
Query: 413 NDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA-LESYCFSMKSTMEDEKLKEKIS 589
+DK + E + E YRNE +E++ +N L S +++ +E+ K ++++S
Sbjct: 635 DDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLS 694
Query: 590 DSDKQT 607
+D+ T
Sbjct: 695 -TDRLT 699
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.3
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = +2
Query: 362 VSAIEKSTNKENKITITNDKGRLSKEEI--ERMVNEAEKYRNEDDKQKETIQAKNALESY 535
V ++K +K++K N + E+ E ++EK ++ K + KNA ++
Sbjct: 70 VVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDAL 129
Query: 536 CFSMKSTMEDEKLKEKISDSDKQTILDKCND 628
M DE+ E S K+ K D
Sbjct: 130 ADDMDDLSLDEEESESSEKSKKKKKKSKSKD 160
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.3
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Frame = +2
Query: 356 LNVSAIEKSTNKENKITITNDKGRLSKEEIERMVN--EAEKYRNEDDKQKETIQAK-NAL 526
LNV +K N+IT T D S++E + N ++ D + + A
Sbjct: 10 LNVMKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGF 69
Query: 527 ESYCFSMKSTMEDEKLKEKISDSDKQ 604
+ + SMKS ++ +++ D++
Sbjct: 70 DEFYDSMKSAEREQMELKRLESKDRR 95
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.2 bits (55), Expect = 4.3
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +2
Query: 401 ITITND-KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 577
I + D K S I V + E+ + D T+Q K +S FS K + E L
Sbjct: 383 IPVNQDFKALQSYRRILDSVIQPERKEGKLDNLINTLQDKK--KSSTFSKK---DREVLL 437
Query: 578 EKISDSDKQTILDKC 622
+KIS+ D QT ++C
Sbjct: 438 KKISEIDSQTSFEQC 452
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 150 TLPSPLNRLRHSPPTLITNPEYSSKYLR 233
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 431 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 553
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/49 (28%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +2
Query: 437 EEIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKE 580
+++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE
Sbjct: 491 QKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKE 538
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 419 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 529
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = +2
Query: 434 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 613
+++I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +
Sbjct: 391 EDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSV 450
Query: 614 D 616
D
Sbjct: 451 D 451
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.7
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 380 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 541
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +2
Query: 311 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGRLSKEEIERMVNEAEK 472
+P TF NG++N+S + ++ N E + DKGR + + ++ E K
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFK 176
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 7.6
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 395 NKITITNDKGRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNALESYCFSMKSTMEDEK 571
NK+ + G + + E E EAE ++ ++D+ ++E ++ L S S E+E+
Sbjct: 187 NKVLAARE-GLIDEGEEEEEREEAELEFVSDDEDEEEISDLEDWLGSDQSMETSESEEEE 245
Query: 572 LKEKISDSDK 601
E SD D+
Sbjct: 246 SSESESDEDE 255
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 377 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 505
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 482 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCND 628
E DK ET+ K A+ S+ +++++++ K+S D L+ CN+
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNN 283
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 347 NGILNVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 487
N + N S +KS+NKE + + RLS + + K ++ED
Sbjct: 409 NTVQNESKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHED 455
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -1
Query: 220 DEYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTV 41
D+YS L + + EC+++F + D S+ N EGK ++L LL
Sbjct: 343 DQYS-LHLTMAQECMNIFEKQQLNLIGAIEQDLSTGSNVEGKVPRSVLSELLPLLDEGNA 401
Query: 40 QDSS 29
++S+
Sbjct: 402 EEST 405
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 10.0
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 381 DFSIAETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARS 235
+ S L IP+AS K S T G G S + P L++ + R+
Sbjct: 479 NLSRRNNLAIPIASRRKSVSAVNTLYGVGSSYTSESFPFSKLTVPVERN 527
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 25.0 bits (52), Expect = 10.0
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +2
Query: 428 LSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEK---ISDSD 598
++K + + +AEK R ED+++K Q ++ L+S+ K +K + ISD D
Sbjct: 213 IAKSKHYKAERQAEKERYEDEREKLDEQMED-LQSFLSDYKKASRKSGIKTQRPIISDGD 271
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 10.0
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
Frame = +2
Query: 362 VSAIEKSTNK-ENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 538
++++++S K ENK+ I +E+++R+ +E RNE + +E +Q + A
Sbjct: 847 LNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEISDKRNELESLEE-LQHEVATR--- 902
Query: 539 FSMKSTMEDEKLKEKISDSDKQTIL----DKCNDTIKWAGFQP 655
+D K+ E+ ++ K+++L +CN+ IK G P
Sbjct: 903 -----IEQDAKINER--NAAKRSLLLARKKECNEKIKSLGVLP 938
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 10.0
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 10/73 (13%)
Frame = +2
Query: 335 DIDANGILNVSAIEKSTNKENKIT----ITNDKGRLSKEEIER-----MVNEAE-KYRNE 484
D+D VS IEK+T + +T N G+L K EIE ++N+ E
Sbjct: 1209 DLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKPDVLNQVSLSIEEE 1268
Query: 485 DDKQKETIQAKNA 523
K KE+ NA
Sbjct: 1269 KPKNKESEVDNNA 1281
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 10.0
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Frame = +2
Query: 416 DKGRLSKEEIERMVNEAEKYR-NEDD--------KQKETIQAKNALESYCFSMKSTMED- 565
+ G K+ +R V +EK EDD K +T++A N S K +
Sbjct: 727 ESGSYLKDLPDRNVGNSEKVTFQEDDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHEL 786
Query: 566 ---EKLKEKISDSDKQTILDKCND 628
EK++EK+++ DK ++ D D
Sbjct: 787 ENIEKIEEKLTEVDKVSLSDAFPD 810
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,460
Number of Sequences: 5004
Number of extensions: 47800
Number of successful extensions: 265
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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