Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2235
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    26   0.94 
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    26   0.94 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            26   1.2  
AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid transpo...    24   3.8  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   6.6  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            23   8.8  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   8.8  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   8.8  

>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 26.2 bits (55), Expect = 0.94
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 9   YLNQQTVVMAYAFTILNSLQGLVIFIFHCLQNDKFRNECARLSRRHR 149
           YL        Y F I N   G + FI +C+    FR     + RRHR
Sbjct: 353 YLTILVQYYCYLFFITNF--G-INFILYCISGQNFRKAVIEMFRRHR 396


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 26.2 bits (55), Expect = 0.94
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +3

Query: 258 VKSRRYHQAAPPD-DELDPRDVTS--YNIHPETRWNVRPTAPIYVPND 392
           V SR      PP+ D  +   + S  +  HP   W V   AP  VP+D
Sbjct: 438 VMSRLRGSPGPPETDRAELERIVSDLFPTHPPVSWPVSSDAPTTVPSD 485


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 218 GVQLEPRRHAPGLRQEQEVPPGR 286
           G + E     PG+RQ+Q  PP R
Sbjct: 47  GEEEEDEEEGPGVRQKQSSPPAR 69


>AF543192-1|AAN40409.1|  636|Anopheles gambiae amino acid
           transporter Ag_AAT8 protein.
          Length = 636

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 483 AMEIPNDYQNLRSR-SPSCFSNKMAGSIGANEWAGSNAGASVWEEHF 620
           A   P  + + RS   P+C  + +AGS   N+ + +    S WE +F
Sbjct: 189 AFMYPLPWAHCRSEWQPNCIDS-LAGSASPNDSSSNRTLTSSWELYF 234


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 84  IFHCLQNDKFRNE 122
           +FHC ++D+ RNE
Sbjct: 952 LFHCPRSDRIRNE 964


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 488 GNTERLSKSEVAFAILLFEQNGGLDWRERMGG 583
           GNT  + ++  A  I+    N  L   ERMGG
Sbjct: 23  GNTVEVKRAPSAEQIIFVRNNRALLIYERMGG 54


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 427 FCGVGTRIDLASSFGTYIGAVGRTFHLVSG 338
           F G G+ +  A+ FG Y+      + +V G
Sbjct: 225 FAGSGSLLVAAAKFGAYVAGADIDYMIVHG 254


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 50  HPELPPRVGHLHI 88
           HPE+P RVG L I
Sbjct: 716 HPEIPIRVGGLEI 728


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 788,634
Number of Sequences: 2352
Number of extensions: 17755
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)