Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2234
         (675 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY070621-1|AAL48092.1|  380|Drosophila melanogaster RE72719p pro...    29   4.4  
AE014297-1376|AAF54696.2|  380|Drosophila melanogaster CG6930-PA...    29   4.4  
AE014297-1375|ABI31165.1|  447|Drosophila melanogaster CG6930-PC...    29   4.4  
AE014297-1374|AAN13528.2|  447|Drosophila melanogaster CG6930-PB...    29   4.4  

>AY070621-1|AAL48092.1|  380|Drosophila melanogaster RE72719p
           protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 276 ISNAAKDNHPMLPRHLCIH---RCTTTNLQQCTFKQAALITLRIERHARKDXHVCL 434
           I NAA      L RH   H   R    N+   +FK+   +TL I  H+ +  HVC+
Sbjct: 268 ICNAALKRKDHLTRHKLSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVCI 323


>AE014297-1376|AAF54696.2|  380|Drosophila melanogaster CG6930-PA,
           isoform A protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 276 ISNAAKDNHPMLPRHLCIH---RCTTTNLQQCTFKQAALITLRIERHARKDXHVCL 434
           I NAA      L RH   H   R    N+   +FK+   +TL I  H+ +  HVC+
Sbjct: 268 ICNAALKRKDHLTRHKLSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVCI 323


>AE014297-1375|ABI31165.1|  447|Drosophila melanogaster CG6930-PC,
           isoform C protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 276 ISNAAKDNHPMLPRHLCIH---RCTTTNLQQCTFKQAALITLRIERHARKDXHVCL 434
           I NAA      L RH   H   R    N+   +FK+   +TL I  H+ +  HVC+
Sbjct: 335 ICNAALKRKDHLTRHKLSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVCI 390


>AE014297-1374|AAN13528.2|  447|Drosophila melanogaster CG6930-PB,
           isoform B protein.
          Length = 447

 Score = 29.5 bits (63), Expect = 4.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 276 ISNAAKDNHPMLPRHLCIH---RCTTTNLQQCTFKQAALITLRIERHARKDXHVCL 434
           I NAA      L RH   H   R    N+   +FK+   +TL I  H+ +  HVC+
Sbjct: 335 ICNAALKRKDHLTRHKLSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVCI 390


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,335
Number of Sequences: 53049
Number of extensions: 399568
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)