Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-2232
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 29 0.64
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.1
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|... 28 1.5
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 28 1.5
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 27 2.6
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 27 2.6
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 27 3.4
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa... 26 4.5
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 4.5
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 5.9
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 7.9
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 29.1 bits (62), Expect = 0.64
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 380 SRGEELAGALEEMDMQILNVGDTPTFDTIRGNKTYSSFVDITVCSADALSLVEDWRVDDS 559
SRG ++ E+D++I +T TF TI NK+ +F+D V + +D +++ S
Sbjct: 532 SRGYQILLPESELDLKI----NTTTFKTIANNKSVDAFLDDCVSFFSRPEMTQDSQLNAS 587
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 615 FDFNNLTLNITVLWS-ELVMLSSTLQSSTR-DSASAEQTVMSTKLEYVLFPRIVSNVGVS 442
FD N L + + ++S ++ L L++ + D++SA + ++ E + PRI+ N +
Sbjct: 110 FDPNTLEIVMEKIYSWDIFRLQEVLKTVPKIDTSSASKPILCAFYEILYSPRILHNKEIF 169
Query: 441 PTF 433
P F
Sbjct: 170 PLF 172
>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 483
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 221 EIVVASFYFE--PDQAIEPYLEQLKEIKLKAGNNKIIIGGDSNAKSTWWGSLK 373
E+++ Y E PD +++ + + +KL GN +I+ G T G L+
Sbjct: 106 EVLMCLTYLEETPDLSLDEKITEFSRLKLTTGNTALILSGGGTFGMTHIGVLQ 158
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -1
Query: 366 LPHQVLFAFESPPIIILLFPAFSLISFSCSRYGSIA 259
+PH +F + P I LFP +++++ R+G +A
Sbjct: 476 IPHSSIFVYTVPIISTFLFP---MVTYAALRFGEVA 508
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 125 AIAVFDDEIDVIQRPDLTTANIVVVKLRTSAWEIVVASFYFEPDQAIEPYLEQLKEIKLK 304
++A D E+ V +R L+ A V+ R ++W IV + E + +E +KE + K
Sbjct: 31 SVASTDQELTVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTAQVELIKEYRQK 90
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 431 LNVGDTPTFDTIRGNKTYSSFVDITVCSADALSLVEDWRVDDSMTSSDHN 580
LN D+P F + +T+S + SLVE W S + +HN
Sbjct: 54 LNGSDSPVFGSKLALQTFSQVYPKLFIGENDRSLVESWVETASALAGNHN 103
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 530 LVEDWRVDDSMTSSDHNTVMFKVRLLKSKGIDL 628
+ E+++ D S S D T++ RL +KGIDL
Sbjct: 175 VAENFQPDPSKASKDFLTIVVISRLYYNKGIDL 207
>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
sulfurtransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 298
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 104 GDAVVKSAIAVFDDEIDVIQRPDLTTANIV 193
G + K +A FDD + VI+ PD +IV
Sbjct: 154 GAKLNKDLVASFDDIVKVIESPDAAGVHIV 183
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 573 SELVMLSSTLQSSTRDSASAEQTVMSTKLEYVLFPRIVSN 454
S+ ++ + S+T+ + +QT S+ EY + I+SN
Sbjct: 333 SKTIVSKTISASTTQQTEPLQQTTPSSDFEYAIMNEIISN 372
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = -2
Query: 434 SVSACPSLQALPPT 393
+VSA PSLQ++PPT
Sbjct: 225 AVSASPSLQSMPPT 238
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 499 VNKAGVCLISP-YCVKCRGISYIQYLHVHLFKRSRQLLTSTIDFQAAPPST 350
+ V L+ P + V +S + YLH + + ++++ LTS + +P T
Sbjct: 990 ITMLNVTLVMPIFMVPAAFVSLLVYLHGYAYSKAQKQLTSLQSSRTSPVFT 1040
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,900
Number of Sequences: 5004
Number of extensions: 54637
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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