Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-2232
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1019 - 10398880-10399314,10399401-10399481,10399560-103996...    31   1.1  
07_03_0164 + 14616156-14616225,14616409-14616477,14617672-146179...    30   2.0  

>12_01_1019 -
           10398880-10399314,10399401-10399481,10399560-10399652,
           10399784-10399999,10403837-10403935,10404244-10404867,
           10404946-10405033,10405167-10405430,10406437-10406504
          Length = 655

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 256 VRLKVERSDYNFPGTGSQFDHYNIRSGQVRALNHINFVI 140
           +  +  R + N+ G     DHY+I S + RA  H N VI
Sbjct: 62  IETRFNREERNYDGERQFADHYSIFSSRFRAFGHKNDVI 100


>07_03_0164 +
           14616156-14616225,14616409-14616477,14617672-14617902,
           14618394-14618557,14618795-14618935,14619632-14619691,
           14620358-14620522,14620676-14620732,14621084-14621148,
           14622235-14622358,14622469-14622606,14622705-14622830
          Length = 469

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 442 SYIQYLHVHLFKRSRQLLTSTIDFQAAPPSTF---CIR-VPP 329
           SYI+  H+HL +   QLL S   F+   P TF   C R VPP
Sbjct: 359 SYIRK-HIHLAEHFEQLLLSDSRFEVVTPRTFSLVCFRLVPP 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,550,951
Number of Sequences: 37544
Number of extensions: 386884
Number of successful extensions: 1244
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1244
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)